Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs16891022	0.92[JPT][hapmap]
rs16891058	0.84[JPT][hapmap]
rs16891092	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs16891124	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16891127	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16891131	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16891132	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16891134	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16891137	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16891162	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs16891184	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16891196	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16891199	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16891231	0.93[CHB][hapmap];0.84[JPT][hapmap]
rs16891233	0.93[CHB][hapmap];0.84[JPT][hapmap]
rs2050180	0.85[CHB][hapmap];0.83[JPT][hapmap]
rs2206604	0.93[CHB][hapmap];0.84[JPT][hapmap]
rs35495385	1.00[AFR][1000 genomes]
rs3918449	0.93[CHB][hapmap];0.84[JPT][hapmap]
rs57977635	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61758417	0.99[ASN][1000 genomes]
rs742727	0.92[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885817	chr6:38036420-39019503	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv830643	chr6:38726675-38905589	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:38766800-38824400	Weak transcription	K562	blood
2	chr6:38804600-38821000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr6:38812600-38821000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr6:38818200-38819600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr6:38818200-38819800	Weak transcription	HUES48 Cell Line	embryonic stem cell

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