Variant report

Variant	rs16891997
Chromosome Location	chr8:120109987-120109988
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:120097671..120100491-chr8:120108931..120111422,2	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11573817	1.00[CEU][hapmap]
rs11784973	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs13248488	0.85[CHB][hapmap]
rs1549414	0.85[CHB][hapmap]
rs1549417	0.85[CHB][hapmap]
rs1549418	0.85[CHB][hapmap]
rs1549419	0.85[CHB][hapmap]
rs16891959	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16891980	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16892010	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16892015	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16892025	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16892203	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs16892211	1.00[CEU][hapmap];0.85[CHB][hapmap];0.85[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs4455869	0.85[CHB][hapmap]
rs57794504	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57984835	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60384705	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61123918	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6469808	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6989177	0.85[CHB][hapmap]
rs6989178	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs6989291	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs6993537	0.85[CHB][hapmap]
rs6993678	0.85[CHB][hapmap]
rs6993820	0.82[CHB][hapmap]
rs7009621	0.82[CHB][hapmap]
rs9693461	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868916	chr8:119911943-120762250	Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	esv2758169	chr8:119943309-120275750	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	esv2759639	chr8:119943309-120275750	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	esv3480605	chr8:120108535-120111999	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3480606	chr8:120108535-120111999	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3451045	chr8:120108625-120111910	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv11923	chr8:120109065-120111913	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv612052	chr8:120109439-120110675	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv612053	chr8:120109439-120110730	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv612054	chr8:120109439-120110784	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv612055	chr8:120109439-120111547	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv612056	chr8:120109439-120111657	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv612057	chr8:120109439-120118617	Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	nsv612058	chr8:120109657-120111547	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv612059	chr8:120109657-120111657	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv612060	chr8:120109947-120111657	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv612061	chr8:120109987-120111657	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:120103800-120117400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr8:120105600-120114800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr8:120106800-120111200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr8:120107000-120111400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr8:120107000-120111400	Weak transcription	Osteobl	bone

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