Variant report

Variant	rs6989178
Chromosome Location	chr8:120183650-120183651
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:120181470..120184053-chr8:120220175..120223118,3	MCF-7	breast:
2	chr8:120183437..120185122-chr8:120187205..120189919,2	MCF-7	breast:
3	chr8:120182916..120184889-chr8:120187238..120189541,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000147676	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1003465	0.82[ASN][1000 genomes]
rs1159094	0.82[ASN][1000 genomes]
rs11784973	1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap]
rs13248214	0.82[ASN][1000 genomes]
rs13248488	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs13260963	0.97[ASN][1000 genomes]
rs13260983	0.97[ASN][1000 genomes]
rs13261773	0.97[ASN][1000 genomes]
rs13280618	0.82[ASN][1000 genomes]
rs1549413	0.82[ASN][1000 genomes]
rs1549414	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs1549417	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs1549418	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs1549419	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs16891959	1.00[JPT][hapmap]
rs16891980	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs16891997	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs16892010	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs16892015	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs16892025	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs16892203	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs16892211	1.00[CHB][hapmap];0.83[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2081430	0.82[ASN][1000 genomes]
rs2875865	0.82[ASN][1000 genomes]
rs34857732	0.82[ASN][1000 genomes]
rs4455869	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs58693451	0.84[ASN][1000 genomes]
rs61358846	0.85[ASN][1000 genomes]
rs61560423	0.84[ASN][1000 genomes]
rs6469808	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs6989015	0.82[ASN][1000 genomes]
rs6989140	0.82[ASN][1000 genomes]
rs6989177	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs6989291	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs6989550	0.84[CHB][hapmap];0.82[ASN][1000 genomes]
rs6993537	1.00[CHB][hapmap];0.80[ASN][1000 genomes]
rs6993678	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs6993820	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs7009621	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs72497323	0.82[ASN][1000 genomes]
rs73312812	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73312817	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73329303	0.84[ASN][1000 genomes]
rs73329306	0.84[ASN][1000 genomes]
rs73329312	0.84[ASN][1000 genomes]
rs73329330	1.00[ASN][1000 genomes]
rs73329364	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9693461	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs9694765	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868916	chr8:119911943-120762250	Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	esv2758169	chr8:119943309-120275750	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	esv2759639	chr8:119943309-120275750	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv6363	chr8:120150231-120188957	Flanking Active TSS Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv982083	chr8:120180351-120187700	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:120183400-120188800	Weak transcription	Duodenum Mucosa	Duodenum

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