Variant report

Variant	rs16892025
Chromosome Location	chr8:120114860-120114861
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:120114312..120117094-chr8:120216104..120219315,3	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11573817	1.00[CEU][hapmap]
rs11784973	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs16891959	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16891980	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16891997	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16892010	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16892015	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16892203	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes]
rs16892211	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes]
rs57794504	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57984835	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58657683	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs58693451	0.88[EUR][1000 genomes]
rs60384705	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61123918	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61358846	0.83[AMR][1000 genomes]
rs61560423	0.88[EUR][1000 genomes]
rs61594459	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6469808	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6989178	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs6989291	1.00[JPT][hapmap]
rs6993678	0.85[CHB][hapmap]
rs73327282	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73327295	0.82[ASN][1000 genomes]
rs73329312	0.88[EUR][1000 genomes]
rs9693461	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868916	chr8:119911943-120762250	Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	esv2758169	chr8:119943309-120275750	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	esv2759639	chr8:119943309-120275750	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv612057	chr8:120109439-120118617	Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:120103800-120117400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr8:120112000-120119800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr8:120114200-120115200	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr8:120114400-120115200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr8:120114600-120115000	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr8:120114600-120115000	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr8:120114600-120115000	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr8:120114600-120115200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr8:120114600-120115200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr8:120114600-120115200	Enhancers	NHEK	skin
11	chr8:120114800-120115000	ZNF genes & repeats	Lung	lung
12	chr8:120114800-120115000	Enhancers	NHDF-Ad	bronchial
13	chr8:120114800-120115200	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr8:120114800-120115200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr8:120114800-120115200	Enhancers	Esophagus	oesophagus
16	chr8:120114800-120115200	Enhancers	HMEC	breast
17	chr8:120114800-120115400	Enhancers	Fetal Brain Male	brain
18	chr8:120114800-120116600	Enhancers	Fetal Brain Female	brain

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