Variant report

Variant	rs16892270
Chromosome Location	chr4:15725867-15725868
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:15725851..15728771-chr4:15730886..15733232,2	K562	blood:
2	chr4:15657008..15658801-chr4:15725500..15727511,2	MCF-7	breast:
3	chr4:15690253..15693117-chr4:15724608..15727161,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000118564	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs16892391	1.00[EUR][1000 genomes]
rs16892404	1.00[EUR][1000 genomes]
rs16892405	1.00[EUR][1000 genomes]
rs4426771	1.00[EUR][1000 genomes]
rs6847178	1.00[EUR][1000 genomes]
rs6849253	1.00[EUR][1000 genomes]
rs6852944	1.00[EUR][1000 genomes]
rs73128019	1.00[EUR][1000 genomes]
rs73798701	1.00[EUR][1000 genomes]
rs73799145	1.00[EUR][1000 genomes]
rs73799151	1.00[EUR][1000 genomes]
rs73799153	1.00[EUR][1000 genomes]
rs7672311	0.86[ASW][hapmap]
rs7700051	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv2757923	chr4:15444617-15749520	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	esv2759227	chr4:15444617-15749520	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv428439	chr4:15556961-15749520	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv1012988	chr4:15597510-16091527	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs16892270	FABP4	trans	brain	seeQTL

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15705000-15735200	Weak transcription	Lung	lung
2	chr4:15705200-15731000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr4:15705400-15727400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr4:15706000-15727800	Weak transcription	Primary hematopoietic stem cells	blood
5	chr4:15707400-15742800	Weak transcription	Primary B cells from cord blood	blood
6	chr4:15708800-15739400	Weak transcription	Ovary	ovary
7	chr4:15709400-15731800	Weak transcription	Brain Hippocampus Middle	brain
8	chr4:15716800-15727600	Weak transcription	Brain Anterior Caudate	brain
9	chr4:15719400-15735800	Weak transcription	NHDF-Ad	bronchial
10	chr4:15719800-15726400	Weak transcription	Fetal Lung	lung
11	chr4:15719800-15736600	Weak transcription	Spleen	Spleen
12	chr4:15720200-15727400	Strong transcription	Fetal Intestine Large	intestine
13	chr4:15720600-15729000	Strong transcription	Duodenum Mucosa	Duodenum
14	chr4:15720800-15727200	Weak transcription	Colonic Mucosa	Colon
15	chr4:15721000-15726400	Weak transcription	Fetal Stomach	stomach
16	chr4:15721000-15726400	Weak transcription	Rectal Smooth Muscle	rectum
17	chr4:15721000-15727000	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr4:15721000-15728800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr4:15721000-15729600	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr4:15721400-15728800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr4:15721600-15726600	Weak transcription	Colon Smooth Muscle	Colon
22	chr4:15723000-15734600	Strong transcription	Primary monocytes fromperipheralblood	blood
23	chr4:15723000-15743000	Strong transcription	Monocytes-CD14+_RO01746	blood
24	chr4:15723000-15744600	Strong transcription	Primary neutrophils fromperipheralblood	blood
25	chr4:15723800-15726000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr4:15724000-15732000	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr4:15724600-15726000	Strong transcription	Adipose Nuclei	Adipose
28	chr4:15724600-15726000	Enhancers	Hela-S3	cervix
29	chr4:15724600-15727200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr4:15724600-15730200	Weak transcription	Fetal Intestine Small	intestine
31	chr4:15725000-15726000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr4:15725400-15726000	Genic enhancers	NHLF	lung
33	chr4:15725400-15726200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr4:15725600-15726000	Enhancers	HepG2	liver
35	chr4:15725600-15727400	Strong transcription	NH-A	brain
36	chr4:15725800-15726800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr4:15725800-15727000	Weak transcription	Osteobl	bone

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