Variant report

Variant	rs6847178
Chromosome Location	chr4:15781925-15781926
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10516293	0.83[AMR][1000 genomes]
rs11574930	1.00[AMR][1000 genomes]
rs16892270	1.00[EUR][1000 genomes]
rs16892391	1.00[EUR][1000 genomes]
rs16892404	1.00[EUR][1000 genomes]
rs16892405	1.00[EUR][1000 genomes]
rs4426771	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4478185	1.00[AMR][1000 genomes]
rs6812996	1.00[AMR][1000 genomes]
rs6813018	1.00[AMR][1000 genomes]
rs6820423	1.00[AMR][1000 genomes]
rs6849253	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6852944	1.00[EUR][1000 genomes]
rs73128019	1.00[EUR][1000 genomes]
rs73798701	1.00[EUR][1000 genomes]
rs73799145	1.00[EUR][1000 genomes]
rs73799151	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73799153	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7660275	1.00[AMR][1000 genomes]
rs7700051	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv1012988	chr4:15597510-16091527	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv10460	chr4:15757611-15818206	ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1013204	chr4:15762970-15836237	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv1010597	chr4:15776181-15836237	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15779800-15782000	Flanking Active TSS	Primary B cells from cord blood	blood
2	chr4:15779800-15782600	Active TSS	Thymus	Thymus
3	chr4:15780000-15782000	Active TSS	Skeletal Muscle Male	skeletal muscle
4	chr4:15780000-15782200	Active TSS	Fetal Thymus	thymus
5	chr4:15780200-15791600	Transcr. at gene 5' and 3'	Dnd41	blood
6	chr4:15780800-15782000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
7	chr4:15780800-15782000	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
8	chr4:15780800-15782000	Active TSS	Colonic Mucosa	Colon
9	chr4:15781000-15782000	Flanking Active TSS	Duodenum Mucosa	Duodenum
10	chr4:15781000-15782800	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr4:15781000-15784600	Weak transcription	Spleen	Spleen
12	chr4:15781200-15782600	Flanking Active TSS	Primary T cells from cord blood	blood
13	chr4:15781200-15783400	Weak transcription	Small Intestine	intestine
14	chr4:15781400-15782000	Enhancers	Primary neutrophils fromperipheralblood	blood
15	chr4:15781400-15782000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
16	chr4:15781400-15782000	Enhancers	Colon Smooth Muscle	Colon
17	chr4:15781400-15783800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
18	chr4:15781400-15784000	Weak transcription	Gastric	stomach
19	chr4:15781400-15784800	Weak transcription	Left Ventricle	heart
20	chr4:15781600-15782000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
21	chr4:15781600-15782000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr4:15781600-15782000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr4:15781600-15782600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
24	chr4:15781600-15783000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr4:15781600-15786200	Enhancers	Primary monocytes fromperipheralblood	blood
26	chr4:15781800-15782000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
27	chr4:15781800-15782000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
28	chr4:15781800-15782000	Active TSS	Liver	Liver
29	chr4:15781800-15782000	Active TSS	Rectal Mucosa Donor 29	rectum
30	chr4:15781800-15782000	Enhancers	Rectal Mucosa Donor 31	rectum
31	chr4:15781800-15782000	Active TSS	GM12878-XiMat	blood
32	chr4:15781800-15782200	Enhancers	Primary hematopoietic stem cells	blood
33	chr4:15781800-15782600	Enhancers	Monocytes-CD14+_RO01746	blood
34	chr4:15781800-15782800	Enhancers	Primary B cells from peripheral blood	blood
35	chr4:15781800-15783200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr4:15781800-15783400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr4:15781800-15783800	Enhancers	Skeletal Muscle Female	skeletal muscle
38	chr4:15781800-15784000	Enhancers	Primary T helper naive cells from peripheral blood	blood
39	chr4:15781800-15784600	Weak transcription	Psoas Muscle	Psoas
40	chr4:15781800-15784800	Enhancers	Primary T helper cells fromperipheralblood	blood
41	chr4:15781800-15784800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr4:15781800-15785200	Weak transcription	Brain Hippocampus Middle	brain
43	chr4:15781800-15785400	Weak transcription	Adipose Nuclei	Adipose
44	chr4:15781800-15792800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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