Variant report

Variant	rs6852944
Chromosome Location	chr4:15788323-15788324
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs16892270	1.00[EUR][1000 genomes]
rs16892391	1.00[EUR][1000 genomes]
rs16892404	1.00[EUR][1000 genomes]
rs16892405	1.00[EUR][1000 genomes]
rs4426771	1.00[EUR][1000 genomes]
rs6847178	1.00[EUR][1000 genomes]
rs6849253	1.00[EUR][1000 genomes]
rs73128019	1.00[EUR][1000 genomes]
rs73798701	1.00[EUR][1000 genomes]
rs73799145	1.00[EUR][1000 genomes]
rs73799151	1.00[EUR][1000 genomes]
rs73799153	1.00[EUR][1000 genomes]
rs7700051	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv1012988	chr4:15597510-16091527	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv10460	chr4:15757611-15818206	ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1013204	chr4:15762970-15836237	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv1010597	chr4:15776181-15836237	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15780200-15791600	Transcr. at gene 5' and 3'	Dnd41	blood
2	chr4:15781800-15792800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr4:15782000-15790000	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr4:15782000-15794600	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr4:15784800-15789800	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr4:15785200-15795400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr4:15786200-15796000	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr4:15786400-15789000	Weak transcription	Primary T cells from cord blood	blood
9	chr4:15786400-15794600	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr4:15786400-15807400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr4:15786600-15788600	Weak transcription	Primary hematopoietic stem cells	blood
12	chr4:15787000-15788400	Strong transcription	Thymus	Thymus
13	chr4:15787200-15790000	Weak transcription	Duodenum Mucosa	Duodenum
14	chr4:15787400-15795200	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr4:15788000-15788800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr4:15788200-15788800	ZNF genes & repeats	Primary B cells from cord blood	blood
17	chr4:15788200-15788800	ZNF genes & repeats	Fetal Thymus	thymus
18	chr4:15788200-15789200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
19	chr4:15788200-15789400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr4:15788200-15789400	ZNF genes & repeats	Spleen	Spleen

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