Variant report

Variant	rs16892370
Chromosome Location	chr4:15755099-15755100
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1004124	1.00[CEU][hapmap]
rs10939632	0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1112243	1.00[CEU][hapmap]
rs1112244	1.00[CEU][hapmap]
rs11574928	1.00[CEU][hapmap]
rs11937594	0.82[EUR][1000 genomes]
rs12500744	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12502292	0.89[EUR][1000 genomes]
rs16892390	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16892438	1.00[CEU][hapmap]
rs16892441	1.00[CEU][hapmap];0.86[MEX][hapmap]
rs16892453	1.00[CEU][hapmap]
rs17848900	0.82[EUR][1000 genomes]
rs1800051	1.00[CEU][hapmap];0.86[MEX][hapmap]
rs1807250	0.82[ASN][1000 genomes]
rs2286552	1.00[CEU][hapmap];0.86[MEX][hapmap]
rs2286553	1.00[CEU][hapmap];0.86[MEX][hapmap]
rs35914998	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3756243	1.00[CEU][hapmap]
rs3796865	1.00[CEU][hapmap]
rs3796866	1.00[CEU][hapmap];0.86[MEX][hapmap]
rs3822256	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs3822257	1.00[CEU][hapmap]
rs4464559	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58156049	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58716318	0.82[EUR][1000 genomes]
rs58955205	0.82[EUR][1000 genomes]
rs60276707	0.82[EUR][1000 genomes]
rs6822515	0.92[CHB][hapmap];0.87[JPT][hapmap];0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6828371	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6837105	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72616178	0.82[EUR][1000 genomes]
rs7690685	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs884473	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs953870	1.00[CEU][hapmap];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv1012988	chr4:15597510-16091527	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15747600-15755600	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr4:15748400-15755800	Weak transcription	Primary B cells from cord blood	blood
3	chr4:15751400-15755200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr4:15752600-15767600	Weak transcription	Fetal Intestine Small	intestine
5	chr4:15753800-15755600	Strong transcription	Primary neutrophils fromperipheralblood	blood
6	chr4:15753800-15755600	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr4:15754200-15755600	Enhancers	Primary T cells from cord blood	blood
8	chr4:15754800-15755400	Enhancers	Fetal Thymus	thymus
9	chr4:15754800-15755800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr4:15754800-15755800	Transcr. at gene 5' and 3'	Dnd41	blood
11	chr4:15754800-15756000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr4:15754800-15757200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr4:15754800-15757400	Enhancers	Primary hematopoietic stem cells	blood
14	chr4:15755000-15755600	Enhancers	Thymus	Thymus
15	chr4:15755000-15755800	Enhancers	Left Ventricle	heart
16	chr4:15755000-15756000	Enhancers	Fetal Muscle Leg	muscle
17	chr4:15755000-15756200	Enhancers	Adipose Nuclei	Adipose
18	chr4:15755000-15756600	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr4:15755000-15757200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
20	chr4:15755000-15757200	Enhancers	Primary T helper cells PMA-I stimulated	--
21	chr4:15755000-15757800	Enhancers	Primary T cells fromperipheralblood	blood
22	chr4:15755000-15757800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
23	chr4:15755000-15758400	Enhancers	HUVEC	blood vessel

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