Variant report

Variant	rs16892453
Chromosome Location	chr4:15849375-15849376
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1004124	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1112243	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.80[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs1112244	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.80[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs11574928	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.82[AFR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16892418	0.92[JPT][hapmap]
rs16892438	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.80[AFR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs16892441	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.80[AFR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17848900	0.80[ASN][1000 genomes]
rs1800051	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.82[AFR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1989182	0.80[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs2286552	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.80[AFR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2286553	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.80[AFR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3756243	1.00[CEU][hapmap];0.92[JPT][hapmap]
rs3796865	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.80[AFR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3796866	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.80[AFR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3796871	1.00[JPT][hapmap]
rs3822256	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap]
rs3822257	1.00[CEU][hapmap];0.92[JPT][hapmap]
rs4508877	1.00[JPT][hapmap]
rs56847340	0.80[AFR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs57522122	0.80[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs59460689	0.80[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs59907454	0.80[AFR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs60276707	0.80[ASN][1000 genomes]
rs61638287	0.80[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs6449195	0.92[JPT][hapmap]
rs6449197	0.92[JPT][hapmap]
rs6836374	1.00[JPT][hapmap]
rs72616180	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72616181	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72616182	0.80[AFR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72616183	0.80[AFR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72616184	0.80[AFR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72616185	0.80[AFR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72616186	0.80[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs72616187	0.80[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs72616188	0.80[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs72616189	0.80[AFR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72616190	0.80[AFR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72616191	0.80[AFR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72616192	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72616193	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7655746	0.83[YRI][hapmap]
rs7690685	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap]
rs953870	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012988	chr4:15597510-16091527	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv916742	chr4:15797994-16064232	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv878714	chr4:15840839-15895791	Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
4	nsv878715	chr4:15840839-15947493	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	esv3447155	chr4:15843004-15849402	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3390489	chr4:15843095-15849390	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15811400-15851200	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr4:15811400-15852200	Weak transcription	Spleen	Spleen
3	chr4:15819200-15853400	Weak transcription	Duodenum Mucosa	Duodenum
4	chr4:15827600-15853400	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr4:15834800-15851800	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr4:15834800-15852800	Weak transcription	Primary B cells from peripheral blood	blood
7	chr4:15835000-15857400	Weak transcription	Psoas Muscle	Psoas
8	chr4:15840400-15855400	Weak transcription	Liver	Liver
9	chr4:15842600-15854400	Weak transcription	Left Ventricle	heart
10	chr4:15842600-15856600	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr4:15843000-15853600	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr4:15843200-15849400	Weak transcription	Primary T cells from cord blood	blood
13	chr4:15843200-15849400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr4:15843200-15849400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr4:15843200-15849400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr4:15843200-15849400	Weak transcription	Fetal Thymus	thymus
17	chr4:15843200-15849400	Weak transcription	Thymus	Thymus
18	chr4:15843200-15849600	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr4:15843200-15849800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr4:15843200-15850200	Weak transcription	Primary hematopoietic stem cells	blood
21	chr4:15843200-15852000	Weak transcription	Primary B cells from cord blood	blood
22	chr4:15843200-15852000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr4:15843200-15852000	Weak transcription	Monocytes-CD14+_RO01746	blood
24	chr4:15843200-15853000	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr4:15843400-15849400	Weak transcription	Dnd41	blood
26	chr4:15849200-15850400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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