Variant report

Variant	rs4508877
Chromosome Location	chr4:15801918-15801919
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:15655671..15657885-chr4:15800456..15802439,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000118564	Chromatin interaction

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10016073	0.81[CHB][hapmap];0.82[CHD][hapmap]
rs10016948	0.80[CHB][hapmap]
rs1004124	1.00[JPT][hapmap]
rs1112243	0.92[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1112244	0.92[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs11574928	0.92[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs11937594	1.00[ASN][1000 genomes]
rs16892418	0.92[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16892438	0.92[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs16892441	0.92[CHB][hapmap];0.96[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs16892453	1.00[JPT][hapmap]
rs17848900	0.93[ASN][1000 genomes]
rs1800051	0.92[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1989182	0.91[ASN][1000 genomes]
rs2286552	0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2286553	0.92[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs28494757	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3756240	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3756243	0.86[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];0.93[JPT][hapmap];0.82[MEX][hapmap];0.92[ASN][1000 genomes]
rs3796865	0.92[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs3796866	0.92[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs3796870	0.81[CHB][hapmap];0.82[CHD][hapmap]
rs3796871	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3796872	0.81[CHB][hapmap]
rs3796874	0.81[CHB][hapmap]
rs3796875	0.81[CHB][hapmap]
rs3822256	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3822257	1.00[CHB][hapmap];0.93[JPT][hapmap];0.94[ASN][1000 genomes]
rs56847340	0.93[ASN][1000 genomes]
rs57522122	0.91[ASN][1000 genomes]
rs58716318	0.93[ASN][1000 genomes]
rs58955205	0.92[ASN][1000 genomes]
rs59907454	0.93[ASN][1000 genomes]
rs60276707	0.93[ASN][1000 genomes]
rs61638287	0.91[ASN][1000 genomes]
rs6449189	0.81[CHB][hapmap]
rs6449191	0.81[CHB][hapmap];0.82[CHD][hapmap]
rs6449195	0.86[CHB][hapmap];0.85[CHD][hapmap];0.93[JPT][hapmap]
rs6449197	0.86[CHB][hapmap];0.85[CHD][hapmap];0.93[JPT][hapmap];0.92[MEX][hapmap]
rs6836374	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72616175	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72616176	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72616177	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72616178	0.95[ASN][1000 genomes]
rs72616179	0.94[ASN][1000 genomes]
rs72616180	0.93[ASN][1000 genomes]
rs72616181	0.93[ASN][1000 genomes]
rs72616182	0.93[ASN][1000 genomes]
rs72616183	0.93[ASN][1000 genomes]
rs72616184	0.93[ASN][1000 genomes]
rs72616185	0.93[ASN][1000 genomes]
rs72616186	0.93[ASN][1000 genomes]
rs72616187	0.93[ASN][1000 genomes]
rs72616188	0.93[ASN][1000 genomes]
rs72616189	0.93[ASN][1000 genomes]
rs72616190	0.93[ASN][1000 genomes]
rs72616191	0.93[ASN][1000 genomes]
rs72616192	0.93[ASN][1000 genomes]
rs7663941	0.81[CHB][hapmap]
rs7666953	0.81[CHB][hapmap];0.82[CHD][hapmap]
rs7667590	0.81[CHB][hapmap];0.82[CHD][hapmap]
rs7679308	0.81[CHB][hapmap]
rs7688839	0.81[CHB][hapmap];0.82[CHD][hapmap]
rs7690685	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs953870	0.92[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs9884223	0.80[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv1012988	chr4:15597510-16091527	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv10460	chr4:15757611-15818206	ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1013204	chr4:15762970-15836237	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv1010597	chr4:15776181-15836237	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
6	nsv916742	chr4:15797994-16064232	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15786400-15807400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr4:15794000-15812200	Genic enhancers	Dnd41	blood
3	chr4:15796000-15805000	Weak transcription	Thymus	Thymus
4	chr4:15796000-15808200	Weak transcription	Spleen	Spleen
5	chr4:15796200-15804200	Weak transcription	Fetal Thymus	thymus
6	chr4:15797600-15807200	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr4:15800800-15802000	Enhancers	Primary B cells from peripheral blood	blood
8	chr4:15800800-15802000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr4:15801400-15805200	Weak transcription	Primary hematopoietic stem cells	blood
10	chr4:15801600-15802400	Weak transcription	Adipose Nuclei	Adipose
11	chr4:15801600-15804600	Weak transcription	Primary T cells from cord blood	blood
12	chr4:15801800-15802000	Flanking Active TSS	Primary B cells from cord blood	blood
13	chr4:15801800-15803200	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr4:15801800-15803200	Weak transcription	Skeletal Muscle Female	skeletal muscle

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