Variant report

Variant	rs6449195
Chromosome Location	chr4:15814814-15814815
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10004415	0.84[ASN][1000 genomes]
rs10016073	0.93[CHB][hapmap];0.96[CHD][hapmap];0.86[ASN][1000 genomes]
rs10016948	0.93[CHB][hapmap];0.86[ASN][1000 genomes]
rs1004124	0.93[JPT][hapmap]
rs10939635	0.86[ASN][1000 genomes]
rs1112243	0.93[JPT][hapmap]
rs1112244	0.93[JPT][hapmap]
rs11574924	0.80[JPT][hapmap]
rs11574928	0.93[JPT][hapmap]
rs16892418	0.86[JPT][hapmap]
rs16892438	0.93[JPT][hapmap]
rs16892441	0.82[CHD][hapmap];0.93[JPT][hapmap]
rs16892453	0.92[JPT][hapmap]
rs1800051	0.85[CHD][hapmap];0.93[JPT][hapmap]
rs2286552	0.85[CHD][hapmap];0.91[JPT][hapmap]
rs2286553	0.85[CHD][hapmap];0.93[JPT][hapmap]
rs28864507	0.86[ASN][1000 genomes]
rs3756243	0.85[CHD][hapmap];0.86[JPT][hapmap];0.90[MEX][hapmap]
rs3775952	0.87[ASN][1000 genomes]
rs3775953	0.87[ASN][1000 genomes]
rs3775955	0.84[ASN][1000 genomes]
rs3796865	0.93[JPT][hapmap]
rs3796866	0.85[CHD][hapmap];0.93[JPT][hapmap]
rs3796870	0.93[CHB][hapmap];0.96[CHD][hapmap];0.87[ASN][1000 genomes]
rs3796871	0.86[CHB][hapmap];0.93[JPT][hapmap]
rs3796872	0.93[CHB][hapmap];0.86[ASN][1000 genomes]
rs3796874	0.93[CHB][hapmap];0.86[ASN][1000 genomes]
rs3796875	0.93[CHB][hapmap];0.81[ASN][1000 genomes]
rs3796876	0.84[ASN][1000 genomes]
rs3822255	0.86[ASN][1000 genomes]
rs3822256	0.85[CHB][hapmap];0.92[JPT][hapmap]
rs3822257	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs4285083	0.86[ASN][1000 genomes]
rs4481229	0.84[ASN][1000 genomes]
rs4508877	0.86[CHB][hapmap];0.85[CHD][hapmap];0.93[JPT][hapmap]
rs4580644	0.82[CHB][hapmap]
rs4634217	0.86[TSI][hapmap]
rs55934802	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55944292	0.86[ASN][1000 genomes]
rs6449184	0.84[ASN][1000 genomes]
rs6449185	0.82[ASN][1000 genomes]
rs6449186	0.84[ASN][1000 genomes]
rs6449187	0.84[ASN][1000 genomes]
rs6449188	0.84[ASN][1000 genomes]
rs6449189	0.93[CHB][hapmap];0.86[ASN][1000 genomes]
rs6449191	0.93[CHB][hapmap];0.96[CHD][hapmap];0.86[ASN][1000 genomes]
rs6449192	0.93[CHB][hapmap];0.87[ASN][1000 genomes]
rs6449193	0.87[ASN][1000 genomes]
rs6449194	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6449197	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6449198	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6449199	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6449200	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6819300	0.86[ASN][1000 genomes]
rs6820962	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6836374	0.86[CHB][hapmap];0.85[CHD][hapmap];0.93[JPT][hapmap]
rs6843266	0.86[ASN][1000 genomes]
rs6844578	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6852105	0.84[ASN][1000 genomes]
rs6853339	0.84[ASN][1000 genomes]
rs6853351	0.80[ASN][1000 genomes]
rs6858514	0.84[ASN][1000 genomes]
rs7661891	0.83[ASN][1000 genomes]
rs7663941	0.93[CHB][hapmap];0.84[ASN][1000 genomes]
rs7665303	0.84[ASN][1000 genomes]
rs7665330	0.84[ASN][1000 genomes]
rs7666953	0.93[CHB][hapmap];0.96[CHD][hapmap];0.84[ASN][1000 genomes]
rs7667590	0.93[CHB][hapmap];0.96[CHD][hapmap];0.86[ASN][1000 genomes]
rs7679308	0.93[CHB][hapmap];0.86[ASN][1000 genomes]
rs7688839	0.93[CHB][hapmap];0.96[CHD][hapmap];0.87[ASN][1000 genomes]
rs7690685	0.86[CHB][hapmap];0.93[JPT][hapmap]
rs7690854	0.84[ASN][1000 genomes]
rs953870	0.93[JPT][hapmap]
rs9884223	0.93[CHB][hapmap];0.86[ASN][1000 genomes]
rs9884920	0.86[ASN][1000 genomes]
rs9990613	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012988	chr4:15597510-16091527	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv10460	chr4:15757611-15818206	ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1013204	chr4:15762970-15836237	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv1010597	chr4:15776181-15836237	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv916742	chr4:15797994-16064232	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15808400-15819400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr4:15810800-15821600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr4:15811200-15818600	Weak transcription	Duodenum Mucosa	Duodenum
4	chr4:15811400-15817800	Weak transcription	Fetal Thymus	thymus
5	chr4:15811400-15818600	Weak transcription	Primary B cells from peripheral blood	blood
6	chr4:15811400-15818600	Weak transcription	Primary hematopoietic stem cells	blood
7	chr4:15811400-15818800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr4:15811400-15819400	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr4:15811400-15819800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr4:15811400-15820000	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr4:15811400-15827000	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr4:15811400-15851200	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr4:15811400-15852200	Weak transcription	Spleen	Spleen
14	chr4:15811600-15818000	Weak transcription	Primary B cells from cord blood	blood
15	chr4:15811600-15818200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr4:15811600-15821600	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr4:15811800-15818000	Weak transcription	Primary T cells from cord blood	blood
18	chr4:15811800-15818200	Weak transcription	Thymus	Thymus
19	chr4:15811800-15819000	Weak transcription	Primary T helper cells fromperipheralblood	blood
20	chr4:15811800-15842200	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr4:15812200-15840000	Strong transcription	Dnd41	blood
22	chr4:15813800-15818400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr4:15813800-15834600	Weak transcription	Psoas Muscle	Psoas
24	chr4:15814000-15818200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr4:15814000-15819000	Weak transcription	Monocytes-CD14+_RO01746	blood
26	chr4:15814000-15819200	Weak transcription	Primary monocytes fromperipheralblood	blood

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