Variant report

Variant	rs3822257
Chromosome Location	chr4:15785016-15785017
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10016073	0.81[CHB][hapmap]
rs10016948	0.81[CHB][hapmap]
rs1004124	1.00[CEU][hapmap];0.93[JPT][hapmap]
rs1112243	1.00[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1112244	1.00[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11574928	1.00[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11937594	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12502292	0.89[EUR][1000 genomes]
rs16892418	0.86[JPT][hapmap];0.92[ASN][1000 genomes]
rs16892438	1.00[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16892441	1.00[CEU][hapmap];0.92[CHB][hapmap];0.93[JPT][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16892453	1.00[CEU][hapmap];0.92[JPT][hapmap]
rs17848900	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1800051	1.00[CEU][hapmap];0.92[CHB][hapmap];0.93[JPT][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1989182	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2286552	1.00[CEU][hapmap];0.82[CHB][hapmap];0.91[JPT][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2286553	1.00[CEU][hapmap];0.92[CHB][hapmap];0.93[JPT][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28494757	0.91[ASN][1000 genomes]
rs3756240	0.94[ASN][1000 genomes]
rs3756243	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3796865	1.00[CEU][hapmap];0.92[CHB][hapmap];0.93[JPT][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3796866	1.00[CEU][hapmap];0.92[CHB][hapmap];0.93[JPT][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3796870	0.81[CHB][hapmap]
rs3796871	1.00[CHB][hapmap];0.93[JPT][hapmap];0.92[ASN][1000 genomes]
rs3796872	0.81[CHB][hapmap]
rs3796874	0.81[CHB][hapmap]
rs3796875	0.81[CHB][hapmap]
rs3822256	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4508877	1.00[CHB][hapmap];0.93[JPT][hapmap];0.94[ASN][1000 genomes]
rs56847340	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57522122	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58716318	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58955205	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59460689	0.89[EUR][1000 genomes]
rs59907454	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60276707	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61638287	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6449189	0.81[CHB][hapmap]
rs6449191	0.81[CHB][hapmap]
rs6449192	0.81[CHB][hapmap]
rs6449195	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs6449197	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs6836374	1.00[CHB][hapmap];0.93[JPT][hapmap];0.94[ASN][1000 genomes]
rs72616175	0.94[ASN][1000 genomes]
rs72616176	0.94[ASN][1000 genomes]
rs72616177	0.94[ASN][1000 genomes]
rs72616178	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72616179	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72616180	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72616181	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72616182	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72616183	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72616184	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72616185	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72616186	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72616187	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72616188	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72616189	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72616190	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72616191	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72616192	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7663941	0.81[CHB][hapmap]
rs7666953	0.81[CHB][hapmap]
rs7667590	0.81[CHB][hapmap]
rs7679308	0.81[CHB][hapmap]
rs7688839	0.81[CHB][hapmap]
rs7690685	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs953870	1.00[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9884223	0.81[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv1012988	chr4:15597510-16091527	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv10460	chr4:15757611-15818206	ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1013204	chr4:15762970-15836237	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv1010597	chr4:15776181-15836237	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15780200-15791600	Transcr. at gene 5' and 3'	Dnd41	blood
2	chr4:15781600-15786200	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr4:15781800-15785200	Weak transcription	Brain Hippocampus Middle	brain
4	chr4:15781800-15785400	Weak transcription	Adipose Nuclei	Adipose
5	chr4:15781800-15792800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr4:15782000-15786600	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr4:15782000-15790000	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr4:15782000-15794600	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr4:15782600-15785600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
10	chr4:15782600-15786200	Genic enhancers	Primary B cells from cord blood	blood
11	chr4:15782600-15786400	Genic enhancers	Primary T cells from cord blood	blood
12	chr4:15782800-15786400	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr4:15783400-15786400	Genic enhancers	Fetal Thymus	thymus
14	chr4:15783400-15787200	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr4:15783400-15787400	Enhancers	Primary B cells from peripheral blood	blood
16	chr4:15783800-15786600	Enhancers	Duodenum Mucosa	Duodenum
17	chr4:15784000-15786000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr4:15784000-15787000	Genic enhancers	Thymus	Thymus
19	chr4:15784600-15785200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
20	chr4:15784600-15785200	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr4:15784600-15786200	Enhancers	Spleen	Spleen
22	chr4:15784800-15785800	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr4:15784800-15786800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr4:15784800-15787000	Weak transcription	Primary T helper cells fromperipheralblood	blood
25	chr4:15784800-15789800	Weak transcription	Primary T helper cells PMA-I stimulated	--
26	chr4:15785000-15785600	Weak transcription	Psoas Muscle	Psoas
27	chr4:15785000-15785800	Genic enhancers	Primary hematopoietic stem cells	blood
28	chr4:15785000-15785800	Enhancers	GM12878-XiMat	blood

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