Variant report

Variant	rs16892931
Chromosome Location	chr8:122016920-122016921
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs16894490	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16894494	1.00[AMR][1000 genomes]
rs16894513	0.82[AFR][1000 genomes]
rs4545106	0.82[AFR][1000 genomes]
rs73315256	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73315259	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73333019	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73333050	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73333065	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73333075	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9773209	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv465790	chr8:121853405-122185415	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv612114	chr8:121853405-122185415	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv891424	chr8:121873345-122393258	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv891425	chr8:121875083-122025559	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv1844734	chr8:121928250-122283585	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:122015600-122017200	Enhancers	Fetal Lung	lung
2	chr8:122016600-122017000	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr8:122016600-122018800	Weak transcription	HSMM	muscle
4	chr8:122016800-122017000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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