Variant report

Variant	rs16894513
Chromosome Location	chr8:122020475-122020476
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs16892931	0.82[AFR][1000 genomes]
rs16894535	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16894536	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16894539	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16894587	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28688078	1.00[AMR][1000 genomes]
rs4545106	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61273259	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73315275	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73317178	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73317192	1.00[AMR][1000 genomes]
rs73318909	1.00[AMR][1000 genomes]
rs73318914	1.00[AMR][1000 genomes]
rs73318917	1.00[AMR][1000 genomes]
rs73333003	1.00[AMR][1000 genomes]
rs73333015	0.85[AFR][1000 genomes]
rs73333023	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73333028	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73333050	0.82[AFR][1000 genomes]
rs7818684	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv465790	chr8:121853405-122185415	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv612114	chr8:121853405-122185415	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv891424	chr8:121873345-122393258	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv891425	chr8:121875083-122025559	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv1844734	chr8:121928250-122283585	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:122020200-122020800	Enhancers	Primary T helper cells fromperipheralblood	blood
2	chr8:122020400-122020600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr8:122020400-122020600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr8:122020400-122020600	Enhancers	Hela-S3	cervix
5	chr8:122020400-122020800	Enhancers	Primary T helper cells PMA-I stimulated	--

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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