Variant report

Variant	rs7818684
Chromosome Location	chr8:121989054-121989055
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:121988250..121991241-chr8:122187936..122189513,2	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs16894490	0.85[AFR][1000 genomes]
rs16894513	1.00[AMR][1000 genomes]
rs16894535	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16894536	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16894539	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16894587	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28688078	1.00[AMR][1000 genomes]
rs4545106	1.00[AMR][1000 genomes]
rs61273259	1.00[AMR][1000 genomes]
rs73315275	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73317178	1.00[AMR][1000 genomes]
rs73317192	1.00[AMR][1000 genomes]
rs73318909	1.00[AMR][1000 genomes]
rs73318914	1.00[AMR][1000 genomes]
rs73318917	1.00[AMR][1000 genomes]
rs73333003	1.00[AMR][1000 genomes]
rs73333015	0.94[AFR][1000 genomes]
rs73333023	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73333028	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891423	chr8:121847643-121994660	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv465790	chr8:121853405-122185415	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv612114	chr8:121853405-122185415	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv891424	chr8:121873345-122393258	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv891425	chr8:121875083-122025559	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	esv1844734	chr8:121928250-122283585	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:121985400-121989800	Weak transcription	HSMMtube	muscle
2	chr8:121985800-121989400	Weak transcription	HSMM	muscle
3	chr8:121987800-121989200	Enhancers	NHLF	lung
4	chr8:121987800-121990000	Enhancers	NHDF-Ad	bronchial
5	chr8:121988200-121989400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr8:121988200-121989600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr8:121988200-121989800	Enhancers	Osteobl	bone
8	chr8:121988400-121989800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr8:121988400-121989800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr8:121988400-121990000	Enhancers	HMEC	breast
11	chr8:121988600-121989400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr8:121988600-121989800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr8:121988600-121990600	Enhancers	Fetal Lung	lung
14	chr8:121988600-121994000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr8:121988800-121989400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr8:121988800-121990000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr8:121988800-121990400	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr8:121989000-121989200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr8:121989000-121989200	Enhancers	Muscle Satellite Cultured Cells	--
20	chr8:121989000-121989400	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr8:121989000-121989400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr8:121989000-121989800	Enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr8:121989000-121989800	Enhancers	Adipose Nuclei	Adipose
24	chr8:121989000-121990000	Enhancers	Fetal Kidney	kidney

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links