Variant report
| Variant | rs4545106 |
|---|---|
| Chromosome Location | chr8:122015728-122015729 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:122015701..122018672-chr8:122022602..122025111,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs16892931 | 0.82[AFR][1000 genomes] |
| rs16894513 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16894535 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16894536 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16894539 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16894587 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28688078 | 1.00[AMR][1000 genomes] |
| rs61273259 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73315275 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73317178 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73317192 | 1.00[AMR][1000 genomes] |
| rs73318909 | 1.00[AMR][1000 genomes] |
| rs73318914 | 1.00[AMR][1000 genomes] |
| rs73318917 | 1.00[AMR][1000 genomes] |
| rs73333003 | 1.00[AMR][1000 genomes] |
| rs73333015 | 0.85[AFR][1000 genomes] |
| rs73333023 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73333028 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73333050 | 0.82[AFR][1000 genomes] |
| rs7818684 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv465790 | chr8:121853405-122185415 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv612114 | chr8:121853405-122185415 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 3 | nsv891424 | chr8:121873345-122393258 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 4 | nsv891425 | chr8:121875083-122025559 | Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 5 | esv1844734 | chr8:121928250-122283585 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:122015600-122016800 | Enhancers | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
| 2 | chr8:122015600-122017200 | Enhancers | Fetal Lung | lung |
