Variant report
| Variant | rs16893175 |
|---|---|
| Chromosome Location | chr6:82198158-82198159 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs11755003 | 1.00[CHB][hapmap];0.92[JPT][hapmap];0.83[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs11758065 | 0.88[AMR][1000 genomes] |
| rs1322895 | 0.85[CHB][hapmap];0.81[JPT][hapmap];0.90[AMR][1000 genomes] |
| rs16893227 | 0.93[AFR][1000 genomes];0.90[AMR][1000 genomes] |
| rs16893251 | 0.90[AMR][1000 genomes] |
| rs16893263 | 0.90[AMR][1000 genomes] |
| rs16893274 | 0.90[AMR][1000 genomes] |
| rs16893284 | 0.85[CHB][hapmap];0.82[JPT][hapmap];0.88[AMR][1000 genomes] |
| rs2181364 | 0.84[AMR][1000 genomes] |
| rs4706901 | 0.88[AMR][1000 genomes] |
| rs4706902 | 0.88[AMR][1000 genomes] |
| rs4706903 | 0.88[AMR][1000 genomes] |
| rs57460191 | 0.90[AMR][1000 genomes] |
| rs58522184 | 0.88[AMR][1000 genomes] |
| rs59021820 | 0.88[AMR][1000 genomes] |
| rs59503058 | 0.88[AMR][1000 genomes] |
| rs60222447 | 1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs73472562 | 0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs73474693 | 0.90[AMR][1000 genomes] |
| rs73476713 | 0.90[AMR][1000 genomes] |
| rs73476717 | 0.88[AMR][1000 genomes] |
| rs73476724 | 0.88[AMR][1000 genomes] |
| rs73476753 | 0.88[AMR][1000 genomes] |
| rs73476756 | 0.88[AMR][1000 genomes] |
| rs73750607 | 0.90[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv604087 | chr6:81792413-82326091 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv1032655 | chr6:81942397-82225830 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:82196600-82200200 | Weak transcription | Liver | Liver |
