Variant report

Variant	rs11755003
Chromosome Location	chr6:82201382-82201383
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11758065	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12208210	0.89[CEU][hapmap];0.83[AMR][1000 genomes]
rs1322895	1.00[CEU][hapmap];0.85[CHB][hapmap];0.91[JPT][hapmap];0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs16893175	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16893227	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs16893251	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs16893263	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs16893274	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs16893284	1.00[CEU][hapmap];0.85[CHB][hapmap];0.91[JPT][hapmap];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2181364	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4706901	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4706902	0.84[AMR][1000 genomes]
rs4706903	0.84[AMR][1000 genomes]
rs57460191	0.86[AMR][1000 genomes]
rs58522184	0.84[AMR][1000 genomes]
rs59021820	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs59503058	0.84[AMR][1000 genomes]
rs60222447	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73472562	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73474693	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs73476713	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs73476717	0.84[AMR][1000 genomes]
rs73476724	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs73476753	0.84[AMR][1000 genomes]
rs73476756	0.84[AMR][1000 genomes]
rs73750607	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604087	chr6:81792413-82326091	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1032655	chr6:81942397-82225830	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82200200-82202400	Enhancers	Liver	Liver
2	chr6:82200400-82202400	Enhancers	HepG2	liver
3	chr6:82201200-82201600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:82201200-82201800	Enhancers	Stomach Mucosa	stomach

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