Variant report

Variant	rs16893227
Chromosome Location	chr6:82274603-82274604
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:82259716..82262314-chr6:82274555..82277096,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11755003	1.00[CEU][hapmap];0.85[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs11758065	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11759327	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12208210	0.89[CEU][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1322895	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16893175	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs16893251	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16893263	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16893274	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16893284	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1917067	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2181364	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4706901	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4706902	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4706903	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs57460191	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58522184	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59021820	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59462812	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs59503058	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60222447	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs73472562	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73474693	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73476713	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73476717	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73476724	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73476753	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73476756	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73750607	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604087	chr6:81792413-82326091	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82270800-82275200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr6:82271800-82276000	Weak transcription	Small Intestine	intestine
3	chr6:82272200-82276000	Weak transcription	Aorta	Aorta
4	chr6:82272600-82274800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr6:82272600-82275000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:82272600-82277800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr6:82272600-82281400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr6:82273000-82274800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr6:82274200-82274800	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr6:82274200-82274800	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr6:82274200-82274800	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr6:82274200-82275400	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr6:82274200-82277800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr6:82274400-82275200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr6:82274400-82275200	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr6:82274400-82275200	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr6:82274400-82275200	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr6:82274400-82275200	Enhancers	Placenta Amnion	Placenta Amnion
19	chr6:82274400-82275200	Enhancers	HSMM	muscle
20	chr6:82274600-82275000	Enhancers	NH-A	brain
21	chr6:82274600-82275400	Enhancers	Muscle Satellite Cultured Cells	--
22	chr6:82274600-82275400	Enhancers	Osteobl	bone

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