Variant report
| Variant | rs16893603 |
|---|---|
| Chromosome Location | chr6:28016684-28016685 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000233224 | Chromatin interaction |
| ENSG00000197153 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:12)
| rs_ID | r2[population] |
|---|---|
| rs10484402 | 1.00[YRI][hapmap] |
| rs1565334 | 1.00[YRI][hapmap] |
| rs16868156 | 1.00[YRI][hapmap] |
| rs16868169 | 1.00[AMR][1000 genomes] |
| rs16893619 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes] |
| rs16893670 | 0.80[CHB][hapmap];0.83[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs16893673 | 0.90[CHB][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs16893699 | 0.82[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs16893741 | 0.86[AFR][1000 genomes];0.85[ASN][1000 genomes] |
| rs59249466 | 0.93[AFR][1000 genomes];0.81[ASN][1000 genomes] |
| rs62638679 | 1.00[AMR][1000 genomes] |
| rs9357054 | 1.00[YRI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1022651 | chr6:27864217-28017997 | Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 50 gene(s) | inside rSNPs | diseases |
| 2 | nsv830619 | chr6:27872302-28062544 | Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 38 gene(s) | inside rSNPs | diseases |
| 3 | nsv883513 | chr6:27982152-28033087 | Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| 4 | nsv981052 | chr6:27987196-28024382 | Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 12 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
