Variant report

Variant	rs1565334
Chromosome Location	chr6:27914874-27914875
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:27863681..27866279-chr6:27914195..27915897,2	K562	blood:
2	chr6:27913399..27915263-chr6:28181371..28183189,2	K562	blood:
3	chr6:27905285..27912363-chr6:27912383..27920173,13	K562	blood:
4	chr6:27914741..27916815-chr6:27928721..27931097,2	K562	blood:
5	chr6:27863681..27865197-chr6:27913812..27915897,2	K562	blood:

Variant related genes	Relation type
ENSG00000238610	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10484402	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1416997	0.82[CEU][hapmap]
rs1480646	0.82[CEU][hapmap]
rs1613149	0.82[CEU][hapmap]
rs16867976	0.80[CHB][hapmap]
rs16867983	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs16868156	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16893603	1.00[YRI][hapmap]
rs16893619	1.00[YRI][hapmap]
rs169432	1.00[CEU][hapmap]
rs1770130	0.82[CEU][hapmap]
rs17708949	0.93[EUR][1000 genomes]
rs17709109	0.82[CEU][hapmap]
rs17709523	0.82[CEU][hapmap]
rs17765491	0.82[CEU][hapmap]
rs1844435	0.84[EUR][1000 genomes]
rs203865	0.82[CEU][hapmap]
rs203870	0.82[CEU][hapmap]
rs203881	0.82[CEU][hapmap]
rs203894	0.82[CEU][hapmap]
rs2130355	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2130356	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2791334	0.82[CEU][hapmap]
rs3175123	1.00[CEU][hapmap];0.92[CHB][hapmap];0.81[JPT][hapmap];0.84[EUR][1000 genomes]
rs3800321	1.00[CEU][hapmap];0.89[JPT][hapmap];0.90[EUR][1000 genomes]
rs9295751	1.00[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.90[EUR][1000 genomes]
rs9348777	0.86[CHB][hapmap]
rs9348780	0.90[EUR][1000 genomes]
rs9348782	0.82[CEU][hapmap]
rs9348790	0.82[CEU][hapmap]
rs9357048	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs9357053	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9357054	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9357055	0.82[CEU][hapmap]
rs9366708	0.81[EUR][1000 genomes]
rs9368538	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9368540	1.00[CEU][hapmap]
rs9368545	0.82[CEU][hapmap]
rs9380022	1.00[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap];0.87[EUR][1000 genomes]
rs9380024	0.84[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs9380042	0.82[CEU][hapmap]
rs9393864	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9393865	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9393873	1.00[CEU][hapmap]
rs9393874	0.82[CEU][hapmap]
rs9393878	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432858	chr6:27719375-28011652	Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	387 gene(s)	inside rSNPs	diseases
2	nsv1022173	chr6:27734824-27959408	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	379 gene(s)	inside rSNPs	diseases
3	nsv883512	chr6:27748631-27969004	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	379 gene(s)	inside rSNPs	diseases
4	nsv601208	chr6:27810626-27969004	Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	237 gene(s)	inside rSNPs	diseases
5	nsv1022651	chr6:27864217-28017997	Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
6	nsv830619	chr6:27872302-28062544	Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27913600-27915000	Strong transcription	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links