Variant report

Variant	rs16867983
Chromosome Location	chr6:27732240-27732241
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:27109057..27111937-chr6:27732114..27735036,2	K562	blood:
2	chr6:27731406..27733552-chr6:27860813..27863522,2	MCF-7	breast:
3	chr6:27342508..27344098-chr6:27729808..27732720,2	K562	blood:
4	chr6:27729351..27732298-chr6:27734296..27736839,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000233224	Chromatin interaction
ENSG00000197153	Chromatin interaction
ENSG00000196331	Chromatin interaction

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs1028311	0.87[CHB][hapmap]
rs10484400	0.95[EUR][1000 genomes]
rs10946943	0.88[CEU][hapmap];1.00[CHB][hapmap];0.80[GIH][hapmap];0.88[JPT][hapmap];0.83[TSI][hapmap];0.91[EUR][1000 genomes]
rs1157432	0.88[CEU][hapmap];0.93[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12055685	0.85[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.90[EUR][1000 genomes]
rs12173985	0.91[EUR][1000 genomes]
rs12174087	0.90[EUR][1000 genomes]
rs12663707	0.95[EUR][1000 genomes]
rs12664599	0.95[EUR][1000 genomes]
rs1555021	0.91[EUR][1000 genomes]
rs1565334	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs16867886	0.91[EUR][1000 genomes]
rs16867916	1.00[CEU][hapmap];0.92[CHB][hapmap];0.93[JPT][hapmap];0.95[EUR][1000 genomes]
rs16867921	0.93[EUR][1000 genomes]
rs16867976	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16868156	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs1973889	0.91[EUR][1000 genomes]
rs3175123	0.93[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[ASN][1000 genomes]
rs34452669	0.81[ASN][1000 genomes]
rs3800321	0.86[CHB][hapmap];0.87[JPT][hapmap]
rs56408767	0.91[EUR][1000 genomes]
rs59893892	0.93[EUR][1000 genomes]
rs60096640	0.81[EUR][1000 genomes]
rs6906653	0.86[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.91[EUR][1000 genomes]
rs6920044	0.88[CEU][hapmap];1.00[CHB][hapmap];0.80[GIH][hapmap];0.88[JPT][hapmap];0.83[TSI][hapmap];0.91[EUR][1000 genomes]
rs73385147	0.91[EUR][1000 genomes]
rs73385152	0.91[EUR][1000 genomes]
rs73385154	0.91[EUR][1000 genomes]
rs7753236	0.93[EUR][1000 genomes]
rs878241	0.91[EUR][1000 genomes]
rs9295751	0.93[CHB][hapmap];0.86[CHD][hapmap];0.88[JPT][hapmap];0.85[MEX][hapmap];1.00[YRI][hapmap]
rs9348771	0.91[EUR][1000 genomes]
rs9348777	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9348778	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9357043	0.91[EUR][1000 genomes]
rs9357044	0.88[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.91[EUR][1000 genomes]
rs9357048	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9366707	0.80[ASN][1000 genomes]
rs9366708	0.80[ASN][1000 genomes]
rs9368517	0.90[EUR][1000 genomes]
rs9368521	0.91[EUR][1000 genomes]
rs9368524	0.88[CEU][hapmap];1.00[CHB][hapmap];0.96[GIH][hapmap];0.88[JPT][hapmap];0.83[TSI][hapmap];0.91[EUR][1000 genomes]
rs9368525	0.88[EUR][1000 genomes]
rs9368526	0.95[EUR][1000 genomes]
rs9368538	0.86[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap]
rs9380000	0.90[EUR][1000 genomes]
rs9380001	0.88[CEU][hapmap];1.00[CHB][hapmap];0.80[GIH][hapmap];0.88[JPT][hapmap];0.83[TSI][hapmap];0.91[EUR][1000 genomes]
rs9380005	0.88[EUR][1000 genomes]
rs9380022	0.93[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap]
rs9380024	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs9393826	0.87[CHB][hapmap];0.88[JPT][hapmap]
rs9393832	0.93[CHB][hapmap];0.88[JPT][hapmap]
rs9393842	0.91[EUR][1000 genomes]
rs9393849	0.83[AFR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9393852	0.83[AFR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9393856	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9393864	0.81[JPT][hapmap]
rs9393865	0.81[JPT][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022797	chr6:27396961-27864277	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	390 gene(s)	inside rSNPs	diseases
2	nsv830618	chr6:27593274-27789605	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	143 gene(s)	inside rSNPs	diseases
3	nsv1031337	chr6:27596676-27734884	Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
4	nsv432858	chr6:27719375-28011652	Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	387 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27725600-27743000	Weak transcription	Right Atrium	heart
2	chr6:27726400-27733000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr6:27726400-27738600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr6:27729600-27732600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr6:27729600-27737000	Weak transcription	K562	blood
6	chr6:27730600-27740000	Weak transcription	Spleen	Spleen
7	chr6:27730800-27739000	Weak transcription	Fetal Intestine Small	intestine
8	chr6:27730800-27740000	Weak transcription	Primary T cells from cord blood	blood

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