Variant report

Variant	rs9393849
Chromosome Location	chr6:27692259-27692260
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:27684698..27689044-chr6:27689656..27693289,4	K562	blood:
2	chr6:27687897..27691780-chr6:27691811..27694513,3	MCF-7	breast:
3	chr6:27690338..27692656-chr6:27698623..27701642,3	K562	blood:
4	chr6:27692126..27696307-chr6:27696693..27700869,4	K562	blood:

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs1028311	0.89[CEU][hapmap];0.80[CHB][hapmap];0.87[JPT][hapmap]
rs10484400	0.95[EUR][1000 genomes]
rs10946943	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs1157432	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12055685	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes]
rs12173985	0.91[EUR][1000 genomes]
rs12174087	0.90[EUR][1000 genomes]
rs12663707	0.95[EUR][1000 genomes]
rs12664599	0.95[EUR][1000 genomes]
rs1555021	0.91[EUR][1000 genomes]
rs16867886	0.91[EUR][1000 genomes]
rs16867916	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes]
rs16867921	0.93[EUR][1000 genomes]
rs16867976	0.93[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16867983	0.88[CEU][hapmap];0.93[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1973889	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2142704	0.89[CEU][hapmap];0.80[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap]
rs3175123	0.86[CHB][hapmap];0.88[JPT][hapmap]
rs3800321	0.81[CHB][hapmap]
rs4711157	0.82[CEU][hapmap];0.80[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap]
rs56408767	0.91[EUR][1000 genomes]
rs59893892	0.93[EUR][1000 genomes]
rs60096640	0.81[EUR][1000 genomes]
rs6906653	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs6920044	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs6934295	0.82[CEU][hapmap];0.81[CHB][hapmap];0.83[JPT][hapmap]
rs73385147	0.91[EUR][1000 genomes]
rs73385152	0.91[EUR][1000 genomes]
rs73385154	0.91[EUR][1000 genomes]
rs7753236	0.93[EUR][1000 genomes]
rs7763685	0.82[CEU][hapmap];0.80[CHB][hapmap];0.83[JPT][hapmap]
rs878241	0.91[EUR][1000 genomes]
rs9295751	0.86[CHB][hapmap];1.00[YRI][hapmap]
rs9348771	0.91[EUR][1000 genomes]
rs9348777	0.88[CEU][hapmap];0.93[CHB][hapmap];0.83[JPT][hapmap];0.90[EUR][1000 genomes]
rs9348778	0.85[EUR][1000 genomes]
rs9357043	0.91[EUR][1000 genomes]
rs9357044	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs9357048	0.88[CEU][hapmap];0.93[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9368517	0.90[EUR][1000 genomes]
rs9368521	0.91[EUR][1000 genomes]
rs9368524	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs9368525	0.88[EUR][1000 genomes]
rs9368526	0.95[EUR][1000 genomes]
rs9380000	0.90[EUR][1000 genomes]
rs9380001	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs9380005	0.88[EUR][1000 genomes]
rs9380022	0.87[CHB][hapmap];1.00[YRI][hapmap]
rs9380024	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs9393826	0.82[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap]
rs9393832	0.80[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap]
rs9393842	0.91[EUR][1000 genomes]
rs9393852	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9393856	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9468157	0.89[CEU][hapmap];0.80[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022797	chr6:27396961-27864277	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	390 gene(s)	inside rSNPs	diseases
2	nsv883510	chr6:27550712-27730064	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
3	nsv830618	chr6:27593274-27789605	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	143 gene(s)	inside rSNPs	diseases
4	nsv1031337	chr6:27596676-27734884	Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
5	nsv601205	chr6:27656255-27730064	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
6	esv3327708	chr6:27683503-27692934	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27689600-27694200	Weak transcription	A549	lung
2	chr6:27690200-27694400	Weak transcription	K562	blood
3	chr6:27691600-27692600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:27692200-27692800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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