Variant report

Variant	rs9357048
Chromosome Location	chr6:27747042-27747043
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:27744761..27747867-chr6:27758538..27761675,3	MCF-7	breast:
2	chr6:27744586..27748272-chr6:27756903..27759108,3	MCF-7	breast:
3	chr6:27739073..27741027-chr6:27745777..27747654,2	MCF-7	breast:
4	chr6:27106342..27108583-chr6:27745560..27747825,2	K562	blood:
5	chr6:27481158..27483967-chr6:27745057..27747671,2	K562	blood:
6	chr6:27745777..27747723-chr6:27753889..27756682,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000270666	Chromatin interaction
ENSG00000198339	Chromatin interaction

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10484400	0.95[EUR][1000 genomes]
rs10946943	0.88[CEU][hapmap];1.00[CHB][hapmap];0.84[GIH][hapmap];0.88[JPT][hapmap];0.83[TSI][hapmap];0.91[EUR][1000 genomes]
rs1157432	0.88[CEU][hapmap];0.93[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12055685	0.85[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.90[EUR][1000 genomes]
rs12173985	0.91[EUR][1000 genomes]
rs12174087	0.90[EUR][1000 genomes]
rs12663707	0.95[EUR][1000 genomes]
rs12664599	0.95[EUR][1000 genomes]
rs1555021	0.91[EUR][1000 genomes]
rs1565334	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs16867886	0.91[EUR][1000 genomes]
rs16867916	1.00[CEU][hapmap];0.92[CHB][hapmap];0.93[JPT][hapmap];0.95[EUR][1000 genomes]
rs16867921	0.93[EUR][1000 genomes]
rs16867976	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16867983	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16868156	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs1973889	0.91[EUR][1000 genomes]
rs3175123	0.93[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.85[ASN][1000 genomes]
rs34452669	0.83[ASN][1000 genomes]
rs3800321	0.86[CHB][hapmap];0.87[JPT][hapmap]
rs56408767	0.91[EUR][1000 genomes]
rs59893892	0.93[EUR][1000 genomes]
rs60096640	0.81[EUR][1000 genomes]
rs6906653	0.86[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.91[EUR][1000 genomes]
rs6920044	0.88[CEU][hapmap];1.00[CHB][hapmap];0.84[GIH][hapmap];0.88[JPT][hapmap];0.83[TSI][hapmap];0.91[EUR][1000 genomes]
rs73385147	0.91[EUR][1000 genomes]
rs73385152	0.91[EUR][1000 genomes]
rs73385154	0.91[EUR][1000 genomes]
rs7753236	0.93[EUR][1000 genomes]
rs878241	0.91[EUR][1000 genomes]
rs9295751	0.93[CHB][hapmap];0.92[CHD][hapmap];0.88[JPT][hapmap];0.85[MEX][hapmap];1.00[YRI][hapmap]
rs9348771	0.91[EUR][1000 genomes]
rs9348777	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9348778	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9357043	0.91[EUR][1000 genomes]
rs9357044	0.88[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.91[EUR][1000 genomes]
rs9368517	0.90[EUR][1000 genomes]
rs9368521	0.91[EUR][1000 genomes]
rs9368524	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];0.83[TSI][hapmap];0.91[EUR][1000 genomes]
rs9368525	0.88[EUR][1000 genomes]
rs9368526	0.95[EUR][1000 genomes]
rs9368538	0.86[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap]
rs9380000	0.90[EUR][1000 genomes]
rs9380001	0.88[CEU][hapmap];1.00[CHB][hapmap];0.84[GIH][hapmap];0.88[JPT][hapmap];0.83[TSI][hapmap];0.91[EUR][1000 genomes]
rs9380005	0.88[EUR][1000 genomes]
rs9380022	0.93[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap]
rs9380024	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs9393826	0.87[CHB][hapmap];0.88[JPT][hapmap]
rs9393832	0.93[CHB][hapmap];0.88[JPT][hapmap]
rs9393842	0.91[EUR][1000 genomes]
rs9393849	0.83[AFR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9393852	0.83[AFR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9393856	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9393864	0.81[JPT][hapmap]
rs9393865	0.81[JPT][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022797	chr6:27396961-27864277	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	390 gene(s)	inside rSNPs	diseases
2	nsv830618	chr6:27593274-27789605	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	143 gene(s)	inside rSNPs	diseases
3	nsv432858	chr6:27719375-28011652	Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	387 gene(s)	inside rSNPs	diseases
4	nsv1017440	chr6:27734824-27864277	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	370 gene(s)	inside rSNPs	diseases
5	nsv1022173	chr6:27734824-27959408	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	379 gene(s)	inside rSNPs	diseases
6	nsv1017057	chr6:27745777-27789683	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	125 gene(s)	inside rSNPs	diseases
7	nsv981120	chr6:27746371-27751747	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	8 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27743600-27750000	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr6:27745600-27753200	Weak transcription	HepG2	liver
3	chr6:27746200-27748400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr6:27747000-27748800	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr6:27747000-27750000	Weak transcription	K562	blood

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