Variant report

Variant	rs12174087
Chromosome Location	chr6:27629703-27629704
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:27598921..27601744-chr6:27628779..27631198,2	K562	blood:
2	chr6:27623608..27625169-chr6:27628712..27630776,2	K562	blood:
3	chr6:27611027..27613554-chr6:27628187..27631088,2	K562	blood:
4	chr6:27625755..27627642-chr6:27629056..27632666,3	K562	blood:

Variant related genes	Relation type
ENSG00000238648	Chromatin interaction

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10484400	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10946943	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1157432	0.93[EUR][1000 genomes]
rs12055685	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12173985	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12663707	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12664599	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1555021	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16867886	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16867916	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16867921	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16867976	0.90[EUR][1000 genomes]
rs16867983	0.90[EUR][1000 genomes]
rs1973889	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56408767	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59893892	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60096640	0.88[EUR][1000 genomes]
rs6906653	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6920044	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73385147	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73385152	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73385154	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73739763	0.96[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs7753236	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs878241	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9348771	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9348777	0.90[EUR][1000 genomes]
rs9348778	0.81[EUR][1000 genomes]
rs9357043	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9357044	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9357048	0.90[EUR][1000 genomes]
rs9368517	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9368521	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9368524	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9368525	0.83[AFR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9368526	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9379995	0.88[ASN][1000 genomes]
rs9380000	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9380001	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9380005	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9393832	0.94[ASN][1000 genomes]
rs9393835	0.96[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs9393836	0.97[ASN][1000 genomes]
rs9393838	0.97[ASN][1000 genomes]
rs9393839	0.96[ASN][1000 genomes]
rs9393842	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9393843	0.86[ASN][1000 genomes]
rs9393849	0.90[EUR][1000 genomes]
rs9393852	0.93[EUR][1000 genomes]
rs9393856	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022797	chr6:27396961-27864277	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	390 gene(s)	inside rSNPs	diseases
2	nsv883510	chr6:27550712-27730064	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
3	nsv1023673	chr6:27570731-27688782	Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
4	nsv830618	chr6:27593274-27789605	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	143 gene(s)	inside rSNPs	diseases
5	nsv1031337	chr6:27596676-27734884	Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
6	nsv525669	chr6:27623511-27657647	Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
7	nsv883511	chr6:27623511-27660508	Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27627600-27631200	Weak transcription	Placenta	Placenta

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