Variant report

Variant	rs9348778
Chromosome Location	chr6:27767936-27767937
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:27098199..27102217-chr6:27766076..27771196,5	MCF-7	breast:
2	chr6:27763449..27765293-chr6:27766819..27768521,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000196787	Chromatin interaction
ENSG00000124635	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10484400	0.86[EUR][1000 genomes]
rs10946943	0.83[EUR][1000 genomes]
rs1157432	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12055685	0.82[EUR][1000 genomes]
rs12173985	0.83[EUR][1000 genomes]
rs12174087	0.81[EUR][1000 genomes]
rs12663707	0.86[EUR][1000 genomes]
rs12664599	0.86[EUR][1000 genomes]
rs1555021	0.83[EUR][1000 genomes]
rs16867886	0.83[EUR][1000 genomes]
rs16867916	0.86[EUR][1000 genomes]
rs16867921	0.85[EUR][1000 genomes]
rs16867976	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16867983	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1844435	0.81[ASN][1000 genomes]
rs1973889	0.83[EUR][1000 genomes]
rs3175123	0.89[ASN][1000 genomes]
rs34452669	0.86[ASN][1000 genomes]
rs56408767	0.83[EUR][1000 genomes]
rs59893892	0.85[EUR][1000 genomes]
rs6906653	0.83[EUR][1000 genomes]
rs6920044	0.83[EUR][1000 genomes]
rs73385147	0.83[EUR][1000 genomes]
rs73385152	0.83[EUR][1000 genomes]
rs73385154	0.83[EUR][1000 genomes]
rs7753236	0.85[EUR][1000 genomes]
rs878241	0.83[EUR][1000 genomes]
rs9348771	0.83[EUR][1000 genomes]
rs9348777	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9357043	0.83[EUR][1000 genomes]
rs9357044	0.83[EUR][1000 genomes]
rs9357048	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9366707	0.82[ASN][1000 genomes]
rs9366708	0.82[ASN][1000 genomes]
rs9368517	0.81[EUR][1000 genomes]
rs9368521	0.83[EUR][1000 genomes]
rs9368524	0.83[EUR][1000 genomes]
rs9368525	0.80[EUR][1000 genomes]
rs9368526	0.86[EUR][1000 genomes]
rs9380000	0.81[EUR][1000 genomes]
rs9380001	0.83[EUR][1000 genomes]
rs9393842	0.83[EUR][1000 genomes]
rs9393849	0.85[EUR][1000 genomes]
rs9393852	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9393856	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022797	chr6:27396961-27864277	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	390 gene(s)	inside rSNPs	diseases
2	nsv830618	chr6:27593274-27789605	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	143 gene(s)	inside rSNPs	diseases
3	nsv432858	chr6:27719375-28011652	Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	387 gene(s)	inside rSNPs	diseases
4	nsv1017440	chr6:27734824-27864277	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	370 gene(s)	inside rSNPs	diseases
5	nsv1022173	chr6:27734824-27959408	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	379 gene(s)	inside rSNPs	diseases
6	nsv1017057	chr6:27745777-27789683	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	125 gene(s)	inside rSNPs	diseases
7	nsv883512	chr6:27748631-27969004	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	379 gene(s)	inside rSNPs	diseases
8	esv3426216	chr6:27767581-27768090	Enhancers Weak transcription	Chromatin interactive region	5 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27761200-27768600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr6:27761600-27768600	Weak transcription	NHEK	skin
3	chr6:27764400-27768400	Enhancers	K562	blood
4	chr6:27764400-27774200	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr6:27764600-27768600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr6:27766600-27768400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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