Variant report

Variant	rs73739763
Chromosome Location	chr6:27614389-27614390
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:27613028..27615946-chr6:27777925..27779442,2	K562	blood:

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1028311	0.90[EUR][1000 genomes]
rs10484400	0.92[ASN][1000 genomes]
rs10946943	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12055685	0.92[ASN][1000 genomes]
rs12173985	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12174087	0.96[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs12663707	0.92[ASN][1000 genomes]
rs12664599	0.91[ASN][1000 genomes]
rs1555021	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16867886	0.96[AFR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16867916	0.91[ASN][1000 genomes]
rs16867921	0.92[ASN][1000 genomes]
rs1973889	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2142704	0.90[EUR][1000 genomes]
rs2143082	0.90[EUR][1000 genomes]
rs4236044	0.89[EUR][1000 genomes]
rs4711157	0.90[EUR][1000 genomes]
rs4713114	0.93[EUR][1000 genomes]
rs56408767	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59893892	0.92[ASN][1000 genomes]
rs6456798	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6906653	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6908024	0.90[EUR][1000 genomes]
rs6911283	0.90[EUR][1000 genomes]
rs6920044	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6934295	0.90[EUR][1000 genomes]
rs73385147	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73385152	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73385154	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7753236	0.92[ASN][1000 genomes]
rs7763685	0.90[EUR][1000 genomes]
rs878241	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9348771	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9357043	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9357044	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9368517	0.97[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs9368521	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9368524	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9368525	0.86[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs9368526	0.92[ASN][1000 genomes]
rs9379994	0.83[ASN][1000 genomes]
rs9379995	0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9380000	0.98[ASN][1000 genomes]
rs9380001	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9380005	0.89[ASN][1000 genomes]
rs9393826	0.88[EUR][1000 genomes]
rs9393832	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9393835	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9393836	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9393838	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9393839	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9393842	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9393843	0.86[ASN][1000 genomes]
rs9461392	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9468157	0.89[EUR][1000 genomes]
rs9468158	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022797	chr6:27396961-27864277	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	390 gene(s)	inside rSNPs	diseases
2	nsv883510	chr6:27550712-27730064	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
3	nsv1023673	chr6:27570731-27688782	Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
4	nsv830618	chr6:27593274-27789605	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	143 gene(s)	inside rSNPs	diseases
5	nsv1031337	chr6:27596676-27734884	Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27612800-27618200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr6:27614200-27614400	Enhancers	HepG2	liver
3	chr6:27614200-27615600	Weak transcription	K562	blood

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