Variant report

Variant	rs9393835
Chromosome Location	chr6:27611226-27611227
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:27611027..27613554-chr6:27628187..27631088,2	K562	blood:
2	chr6:27439118..27441039-chr6:27609701..27612516,2	K562	blood:
3	chr6:27605830..27608089-chr6:27611065..27613066,2	K562	blood:
4	chr6:27605830..27609989-chr6:27610797..27613707,4	K562	blood:

Variant related genes	Relation type
ENSG00000096654	Chromatin interaction

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1028311	0.90[EUR][1000 genomes]
rs10484400	0.92[ASN][1000 genomes]
rs10946943	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12055685	0.92[ASN][1000 genomes]
rs12173985	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12174087	0.96[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs12663707	0.92[ASN][1000 genomes]
rs12664599	0.91[ASN][1000 genomes]
rs1555021	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16867886	0.96[AFR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16867916	0.91[ASN][1000 genomes]
rs16867921	0.92[ASN][1000 genomes]
rs1973889	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2142704	0.90[EUR][1000 genomes]
rs2143082	0.90[EUR][1000 genomes]
rs4236044	0.89[EUR][1000 genomes]
rs4711157	0.90[EUR][1000 genomes]
rs4713114	0.93[EUR][1000 genomes]
rs56408767	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59893892	0.92[ASN][1000 genomes]
rs6456798	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6906653	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6908024	0.90[EUR][1000 genomes]
rs6911283	0.90[EUR][1000 genomes]
rs6920044	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6934295	0.90[EUR][1000 genomes]
rs73385147	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73385152	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73385154	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73739763	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7753236	0.92[ASN][1000 genomes]
rs7763685	0.90[EUR][1000 genomes]
rs878241	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9348771	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9357043	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9357044	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9368517	0.97[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs9368521	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9368524	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9368525	0.86[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs9368526	0.92[ASN][1000 genomes]
rs9379994	0.83[ASN][1000 genomes]
rs9379995	0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9380000	0.98[ASN][1000 genomes]
rs9380001	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9380005	0.89[ASN][1000 genomes]
rs9393826	0.88[EUR][1000 genomes]
rs9393832	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9393836	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9393838	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9393839	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9393842	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9393843	0.86[ASN][1000 genomes]
rs9461392	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9468157	0.89[EUR][1000 genomes]
rs9468158	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022797	chr6:27396961-27864277	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	390 gene(s)	inside rSNPs	diseases
2	nsv883510	chr6:27550712-27730064	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
3	nsv1023673	chr6:27570731-27688782	Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
4	nsv830618	chr6:27593274-27789605	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	143 gene(s)	inside rSNPs	diseases
5	nsv1031337	chr6:27596676-27734884	Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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