Variant report

Variant	rs9348790
Chromosome Location	chr6:28031494-28031495
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:28028745..28030518-chr6:28030810..28033569,2	K562	blood:
2	chr6:27859494..27862107-chr6:28030841..28032990,2	MCF-7	breast:
3	chr6:27853727..27855534-chr6:28030889..28032477,2	MCF-7	breast:
4	chr6:28024259..28026067-chr6:28029908..28032132,2	K562	blood:

Variant related genes	Relation type
ENSG00000233224	Chromatin interaction
ENSG00000197153	Chromatin interaction
ENSG00000196331	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1150676	1.00[CEU][hapmap]
rs1150680	1.00[CEU][hapmap]
rs1150683	1.00[CEU][hapmap]
rs1225709	1.00[CEU][hapmap]
rs1416997	1.00[CEU][hapmap]
rs1480646	1.00[CEU][hapmap]
rs149957	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1529749	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1565334	0.82[CEU][hapmap]
rs1613149	1.00[CEU][hapmap]
rs169432	1.00[CEU][hapmap]
rs169433	1.00[CEU][hapmap]
rs172164	1.00[CEU][hapmap]
rs1770130	1.00[CEU][hapmap]
rs17709097	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17709109	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs17709523	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17765491	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs1871695	1.00[CEU][hapmap]
rs2030008	0.82[CEU][hapmap];1.00[JPT][hapmap]
rs203865	1.00[CEU][hapmap]
rs203870	1.00[CEU][hapmap]
rs203881	1.00[CEU][hapmap]
rs203885	1.00[CEU][hapmap]
rs203894	1.00[CEU][hapmap]
rs2394044	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2791334	1.00[CEU][hapmap]
rs41375446	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs427348	1.00[CEU][hapmap]
rs539474	1.00[CEU][hapmap]
rs9348782	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs9348785	1.00[CHB][hapmap];0.81[JPT][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9348795	1.00[CEU][hapmap]
rs9357055	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs9357056	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9357059	0.81[ASN][1000 genomes]
rs9368540	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9368545	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs9368562	1.00[CEU][hapmap]
rs9380042	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9393864	0.82[CEU][hapmap]
rs9393865	0.82[CEU][hapmap]
rs9393873	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs9393874	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs9393878	0.82[CEU][hapmap]
rs9393879	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830619	chr6:27872302-28062544	Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
2	nsv883513	chr6:27982152-28033087	Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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