Variant report
| Variant | rs9393878 |
|---|---|
| Chromosome Location | chr6:28015589-28015590 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000233224 | Chromatin interaction |
| ENSG00000197153 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:36)
| rs_ID | r2[population] |
|---|---|
| rs10484402 | 1.00[CEU][hapmap] |
| rs1150676 | 0.82[CEU][hapmap] |
| rs1416997 | 0.82[CEU][hapmap] |
| rs1480646 | 0.82[CEU][hapmap] |
| rs1565334 | 1.00[CEU][hapmap] |
| rs1613149 | 0.82[CEU][hapmap] |
| rs16868156 | 1.00[CEU][hapmap] |
| rs169432 | 1.00[CEU][hapmap] |
| rs1770130 | 0.82[CEU][hapmap] |
| rs17708949 | 0.80[ASN][1000 genomes] |
| rs17709109 | 0.82[CEU][hapmap] |
| rs17709523 | 0.82[CEU][hapmap];0.84[ASN][1000 genomes] |
| rs17765491 | 0.82[CEU][hapmap] |
| rs203865 | 0.82[CEU][hapmap] |
| rs203870 | 0.82[CEU][hapmap] |
| rs203881 | 0.82[CEU][hapmap] |
| rs203894 | 0.82[CEU][hapmap] |
| rs2791334 | 0.82[CEU][hapmap] |
| rs3800321 | 1.00[CEU][hapmap] |
| rs41269281 | 1.00[AFR][1000 genomes] |
| rs9295751 | 1.00[CEU][hapmap] |
| rs9348782 | 0.82[CEU][hapmap] |
| rs9348790 | 0.82[CEU][hapmap] |
| rs9357054 | 1.00[CEU][hapmap] |
| rs9357055 | 0.82[CEU][hapmap] |
| rs9368538 | 0.82[CEU][hapmap] |
| rs9368540 | 1.00[CEU][hapmap] |
| rs9368545 | 0.82[CEU][hapmap] |
| rs9368562 | 0.82[CEU][hapmap] |
| rs9380022 | 1.00[CEU][hapmap] |
| rs9380042 | 0.82[CEU][hapmap] |
| rs9393864 | 1.00[CEU][hapmap] |
| rs9393865 | 1.00[CEU][hapmap] |
| rs9393873 | 1.00[CEU][hapmap] |
| rs9393874 | 0.82[CEU][hapmap] |
| rs9393879 | 0.82[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1022651 | chr6:27864217-28017997 | Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 50 gene(s) | inside rSNPs | diseases |
| 2 | nsv830619 | chr6:27872302-28062544 | Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 38 gene(s) | inside rSNPs | diseases |
| 3 | nsv883513 | chr6:27982152-28033087 | Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| 4 | nsv981052 | chr6:27987196-28024382 | Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 12 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
