Variant report
| Variant | rs16893619 |
|---|---|
| Chromosome Location | chr6:28031029-28031030 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:28028745..28030518-chr6:28030810..28033569,2 | K562 | blood: | |
| 2 | chr6:27859494..27862107-chr6:28030841..28032990,2 | MCF-7 | breast: | |
| 3 | chr6:27853727..27855534-chr6:28030889..28032477,2 | MCF-7 | breast: | |
| 4 | chr6:28024259..28026067-chr6:28029908..28032132,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000197153 | Chromatin interaction |
| ENSG00000233224 | Chromatin interaction |
| ENSG00000196331 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:15)
| rs_ID | r2[population] |
|---|---|
| rs10484402 | 0.84[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap] |
| rs1150703 | 1.00[GIH][hapmap] |
| rs1150712 | 1.00[GIH][hapmap] |
| rs1565334 | 1.00[YRI][hapmap] |
| rs16868156 | 0.84[ASW][hapmap];1.00[LWK][hapmap];0.92[MKK][hapmap];1.00[YRI][hapmap] |
| rs16868169 | 1.00[AMR][1000 genomes] |
| rs16893603 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes] |
| rs16893670 | 0.91[CHB][hapmap];0.82[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs16893673 | 0.91[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs16893699 | 0.82[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.89[ASN][1000 genomes] |
| rs16893741 | 0.91[ASN][1000 genomes] |
| rs59249466 | 0.87[ASN][1000 genomes] |
| rs62638679 | 1.00[AMR][1000 genomes] |
| rs9357054 | 0.84[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap] |
| rs988084 | 1.00[GIH][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv830619 | chr6:27872302-28062544 | Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 38 gene(s) | inside rSNPs | diseases |
| 2 | nsv883513 | chr6:27982152-28033087 | Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
