Variant report

Variant	rs16894020
Chromosome Location	chr6:28340245-28340246
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:28340056..28341598-chr6:28344823..28347301,2	K562	blood:
2	chr6:27784797..27786716-chr6:28340044..28342685,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs2232430	0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs4412194	0.92[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs72844216	0.90[ASN][1000 genomes]
rs72854550	0.93[ASN][1000 genomes]
rs72854558	0.93[ASN][1000 genomes]
rs733743	0.87[JPT][hapmap];0.91[ASN][1000 genomes]
rs9468379	0.92[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs9468380	0.83[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830620	chr6:28173997-28348033	Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28318400-28350800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:28324400-28347600	Weak transcription	NHDF-Ad	bronchial
3	chr6:28324400-28347800	Weak transcription	Fetal Brain Male	brain
4	chr6:28324400-28348200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr6:28324400-28357200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr6:28324400-28357600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr6:28324600-28349400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr6:28324600-28349600	Weak transcription	NHEK	skin
9	chr6:28324600-28358600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr6:28324800-28341600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr6:28325400-28350800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr6:28332000-28350600	Weak transcription	Psoas Muscle	Psoas
13	chr6:28333800-28345800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr6:28333800-28347800	Weak transcription	HUVEC	blood vessel
15	chr6:28333800-28348000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr6:28333800-28349800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr6:28333800-28349800	Weak transcription	Pancreas	Pancrea
18	chr6:28333800-28350800	Weak transcription	Lung	lung
19	chr6:28333800-28351000	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr6:28334000-28345600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr6:28334000-28346600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr6:28334000-28346800	Weak transcription	Fetal Kidney	kidney
23	chr6:28334000-28348000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr6:28334000-28350000	Weak transcription	Rectal Smooth Muscle	rectum
25	chr6:28334000-28350600	Weak transcription	Colonic Mucosa	Colon
26	chr6:28334000-28350800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr6:28334200-28345200	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr6:28334200-28345600	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr6:28334200-28345600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr6:28334200-28346000	Weak transcription	Fetal Intestine Small	intestine
31	chr6:28334200-28346000	Weak transcription	HMEC	breast
32	chr6:28334200-28346200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr6:28334200-28347800	Weak transcription	NHLF	lung
34	chr6:28334200-28348000	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr6:28334200-28348000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr6:28334200-28348200	Weak transcription	Brain Substantia Nigra	brain
37	chr6:28334200-28348800	Weak transcription	Fetal Heart	heart
38	chr6:28334200-28349400	Weak transcription	Right Ventricle	heart
39	chr6:28334200-28349800	Weak transcription	Aorta	Aorta
40	chr6:28334200-28351000	Weak transcription	Gastric	stomach
41	chr6:28334200-28351200	Weak transcription	Spleen	Spleen
42	chr6:28334400-28345600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr6:28334400-28345600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr6:28334400-28345600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr6:28334400-28345600	Weak transcription	Fetal Intestine Large	intestine
46	chr6:28334400-28345800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr6:28334400-28345800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr6:28334400-28347200	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr6:28334400-28347400	Weak transcription	HSMM	muscle
50	chr6:28334400-28347600	Weak transcription	H1 Cell Line	embryonic stem cell

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