Variant report

Variant	rs733743
Chromosome Location	chr6:28327371-28327372
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:28326753..28329477-chr6:28335475..28338195,2	K562	blood:
2	chr6:28325434..28327610-chr6:28328938..28331453,3	MCF-7	breast:
3	chr6:28323097..28326388-chr6:28326781..28330360,5	K562	blood:
4	chr6:28212274..28214465-chr6:28325951..28327477,2	K562	blood:

Variant related genes	Relation type
ENSG00000235109	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1150703	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs1150712	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs16893892	0.86[ASW][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs16894020	0.91[ASN][1000 genomes]
rs213233	0.83[JPT][hapmap]
rs2142731	0.86[ASW][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs2232430	0.88[CEU][hapmap];0.85[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4412194	0.88[CEU][hapmap];0.85[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];0.88[MEX][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4713155	0.93[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs72844216	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72854550	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72854558	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9468379	0.88[CEU][hapmap];0.85[CHB][hapmap];0.88[JPT][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9468380	0.84[JPT][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs988083	0.82[JPT][hapmap]
rs988084	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830620	chr6:28173997-28348033	Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28318400-28332000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:28318400-28350800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr6:28324200-28328600	Weak transcription	Primary B cells from cord blood	blood
4	chr6:28324200-28331600	Weak transcription	Thymus	Thymus
5	chr6:28324400-28327400	Weak transcription	Primary T cells from cord blood	blood
6	chr6:28324400-28327400	Weak transcription	Fetal Intestine Large	intestine
7	chr6:28324400-28327800	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr6:28324400-28328200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr6:28324400-28328800	Weak transcription	Brain Anterior Caudate	brain
10	chr6:28324400-28329600	Weak transcription	Aorta	Aorta
11	chr6:28324400-28329600	Weak transcription	Fetal Intestine Small	intestine
12	chr6:28324400-28330600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr6:28324400-28330800	Weak transcription	Brain Substantia Nigra	brain
14	chr6:28324400-28331000	Weak transcription	Psoas Muscle	Psoas
15	chr6:28324400-28331000	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr6:28324400-28331200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr6:28324400-28331600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr6:28324400-28332600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr6:28324400-28333000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr6:28324400-28333000	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr6:28324400-28333200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr6:28324400-28336000	Weak transcription	GM12878-XiMat	blood
23	chr6:28324400-28347600	Weak transcription	NHDF-Ad	bronchial
24	chr6:28324400-28347800	Weak transcription	Fetal Brain Male	brain
25	chr6:28324400-28348200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr6:28324400-28357200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr6:28324400-28357600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr6:28324600-28328200	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr6:28324600-28328200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr6:28324600-28328200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr6:28324600-28328200	Weak transcription	Fetal Lung	lung
32	chr6:28324600-28328200	Weak transcription	Osteobl	bone
33	chr6:28324600-28328400	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr6:28324600-28328400	Weak transcription	HSMMtube	muscle
35	chr6:28324600-28328800	Weak transcription	Primary hematopoietic stem cells	blood
36	chr6:28324600-28329200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr6:28324600-28329600	Weak transcription	Pancreas	Pancrea
38	chr6:28324600-28329800	Weak transcription	Primary T helper cells PMA-I stimulated	--
39	chr6:28324600-28329800	Weak transcription	Brain Hippocampus Middle	brain
40	chr6:28324600-28330200	Weak transcription	Primary T cells fromperipheralblood	blood
41	chr6:28324600-28330800	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr6:28324600-28330800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
43	chr6:28324600-28330800	Weak transcription	Brain Cingulate Gyrus	brain
44	chr6:28324600-28330800	Weak transcription	Colonic Mucosa	Colon
45	chr6:28324600-28330800	Weak transcription	Left Ventricle	heart
46	chr6:28324600-28331000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
47	chr6:28324600-28331000	Weak transcription	Spleen	Spleen
48	chr6:28324600-28331200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr6:28324600-28331200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr6:28324600-28331200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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