Variant report

Variant	rs72854558
Chromosome Location	chr6:28398984-28398985
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:28392901..28395106-chr6:28398520..28400756,3	K562	blood:
2	chr6:28397761..28399629-chr6:28401778..28405817,3	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs16894020	0.93[ASN][1000 genomes]
rs2232430	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4412194	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72844216	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72854550	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs733743	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9468379	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9468380	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28371200-28410400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:28384600-28410200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:28385400-28402000	Weak transcription	Fetal Kidney	kidney
4	chr6:28385400-28402200	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr6:28385600-28410800	Weak transcription	Lung	lung
6	chr6:28386000-28402200	Weak transcription	Osteobl	bone
7	chr6:28386000-28410400	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr6:28386800-28402200	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr6:28387800-28410200	Weak transcription	Brain Angular Gyrus	brain
10	chr6:28388000-28410400	Weak transcription	NHDF-Ad	bronchial
11	chr6:28388400-28399200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr6:28389200-28410200	Weak transcription	NHLF	lung
13	chr6:28389400-28403200	Weak transcription	Adipose Nuclei	Adipose
14	chr6:28389400-28410000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr6:28389600-28409800	Weak transcription	Brain Cingulate Gyrus	brain
16	chr6:28389600-28410200	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr6:28389600-28410400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr6:28389600-28410400	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr6:28389800-28410800	Weak transcription	Colonic Mucosa	Colon
20	chr6:28390200-28410400	Weak transcription	Rectal Smooth Muscle	rectum
21	chr6:28391400-28402400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr6:28391400-28410400	Weak transcription	Fetal Intestine Large	intestine
23	chr6:28391400-28410800	Weak transcription	Placenta	Placenta
24	chr6:28391600-28401800	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr6:28391600-28402000	Weak transcription	Brain Hippocampus Middle	brain
26	chr6:28391600-28402000	Weak transcription	Left Ventricle	heart
27	chr6:28391600-28402000	Weak transcription	Psoas Muscle	Psoas
28	chr6:28391600-28402200	Weak transcription	HSMMtube	muscle
29	chr6:28391600-28402200	Weak transcription	NH-A	brain
30	chr6:28391600-28410200	Weak transcription	Brain Anterior Caudate	brain
31	chr6:28391600-28410800	Weak transcription	Pancreas	Pancrea
32	chr6:28392000-28410200	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr6:28392000-28410400	Weak transcription	NHEK	skin
34	chr6:28392200-28402000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr6:28392200-28410400	Weak transcription	Right Ventricle	heart
36	chr6:28392400-28410000	Weak transcription	HMEC	breast
37	chr6:28392400-28410400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr6:28393600-28410800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr6:28393800-28402400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr6:28393800-28404200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr6:28393800-28410600	Weak transcription	Aorta	Aorta
42	chr6:28394000-28401800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr6:28394200-28409800	Weak transcription	Fetal Heart	heart
44	chr6:28394400-28405000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr6:28394800-28402000	Weak transcription	Primary hematopoietic stem cells	blood
46	chr6:28395200-28401000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr6:28395200-28402200	Weak transcription	Primary T cells from cord blood	blood
48	chr6:28395200-28403800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr6:28395200-28410200	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr6:28395400-28409400	Weak transcription	Fetal Brain Male	brain

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