Variant report

Variant	rs16895430
Chromosome Location	chr6:164281287-164281288
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:164197154..164198920-chr6:164280732..164282749,2	K562	blood:
2	chr6:164268990..164271906-chr6:164280285..164282030,2	K562	blood:
3	chr6:164280371..164282410-chr6:164287634..164290402,4	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs16895397	1.00[CEU][hapmap]
rs16895435	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16895437	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16895447	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16895449	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56936161	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61392766	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs6455925	0.85[AMR][1000 genomes]
rs6904452	0.81[AMR][1000 genomes]
rs6924091	0.81[AMR][1000 genomes]
rs7752540	1.00[CEU][hapmap];0.88[YRI][hapmap];0.83[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs7767096	0.81[AMR][1000 genomes]
rs7768454	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1026707	chr6:164188210-164749206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv538527	chr6:164188210-164749206	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	esv1798922	chr6:164257563-164298780	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:164275600-164287000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:164280600-164281400	Enhancers	NHLF	lung
3	chr6:164280800-164281400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr6:164280800-164281400	Enhancers	K562	blood
5	chr6:164280800-164281600	Enhancers	NH-A	brain
6	chr6:164281000-164282000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr6:164281000-164282000	Enhancers	Muscle Satellite Cultured Cells	--
8	chr6:164281000-164282000	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr6:164281000-164282200	Enhancers	Fetal Heart	heart
10	chr6:164281000-164282400	Enhancers	NHDF-Ad	bronchial
11	chr6:164281200-164281400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr6:164281200-164281400	Enhancers	Brain Anterior Caudate	brain
13	chr6:164281200-164281600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr6:164281200-164281800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr6:164281200-164281800	Enhancers	HSMM	muscle
16	chr6:164281200-164281800	Enhancers	HSMMtube	muscle
17	chr6:164281200-164282000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr6:164281200-164282000	Enhancers	Placenta	Placenta
19	chr6:164281200-164282200	Enhancers	Brain Germinal Matrix	brain
20	chr6:164281200-164282400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr6:164281200-164282600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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