Variant report

Variant	rs16895435
Chromosome Location	chr6:164281768-164281769
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:164281502..164283486-chr6:164284989..164286680,2	K562	blood:
2	chr6:164197154..164198920-chr6:164280732..164282749,2	K562	blood:
3	chr6:164268990..164271906-chr6:164280285..164282030,2	K562	blood:
4	chr6:164280371..164282410-chr6:164287634..164290402,4	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10080282	0.84[EUR][1000 genomes]
rs16895397	1.00[CEU][hapmap]
rs16895430	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16895437	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16895447	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16895449	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56936161	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61392766	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs6455925	0.85[AMR][1000 genomes]
rs6904452	0.81[AMR][1000 genomes]
rs6924091	0.81[AMR][1000 genomes]
rs7752540	1.00[CEU][hapmap];0.94[YRI][hapmap];0.84[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs7767096	0.81[AMR][1000 genomes]
rs7768454	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1026707	chr6:164188210-164749206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv538527	chr6:164188210-164749206	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	esv1798922	chr6:164257563-164298780	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:164275600-164287000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:164281000-164282000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr6:164281000-164282000	Enhancers	Muscle Satellite Cultured Cells	--
4	chr6:164281000-164282000	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr6:164281000-164282200	Enhancers	Fetal Heart	heart
6	chr6:164281000-164282400	Enhancers	NHDF-Ad	bronchial
7	chr6:164281200-164281800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr6:164281200-164281800	Enhancers	HSMM	muscle
9	chr6:164281200-164281800	Enhancers	HSMMtube	muscle
10	chr6:164281200-164282000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr6:164281200-164282000	Enhancers	Placenta	Placenta
12	chr6:164281200-164282200	Enhancers	Brain Germinal Matrix	brain
13	chr6:164281200-164282400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr6:164281200-164282600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr6:164281400-164282000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr6:164281400-164282000	Flanking Active TSS	Brain Anterior Caudate	brain
17	chr6:164281400-164282000	Enhancers	Fetal Brain Female	brain
18	chr6:164281400-164282000	Flanking Active TSS	NHLF	lung
19	chr6:164281400-164282200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr6:164281400-164282600	Enhancers	Primary hematopoietic stem cells	blood
21	chr6:164281400-164282600	Flanking Active TSS	K562	blood
22	chr6:164281600-164281800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr6:164281600-164281800	Bivalent Enhancer	Primary B cells from peripheral blood	blood
24	chr6:164281600-164281800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr6:164281600-164281800	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
26	chr6:164281600-164281800	Enhancers	Fetal Muscle Trunk	muscle
27	chr6:164281600-164281800	Enhancers	Skeletal Muscle Female	skeletal muscle
28	chr6:164281600-164281800	Active TSS	Stomach Smooth Muscle	stomach
29	chr6:164281600-164282000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr6:164281600-164282000	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr6:164281600-164282000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr6:164281600-164282000	Enhancers	Primary hematopoietic stem cells short term culture	blood
33	chr6:164281600-164282000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
34	chr6:164281600-164282000	Enhancers	Aorta	Aorta
35	chr6:164281600-164282000	Enhancers	Brain Hippocampus Middle	brain
36	chr6:164281600-164282000	Enhancers	Left Ventricle	heart
37	chr6:164281600-164282000	Flanking Active TSS	Right Atrium	heart
38	chr6:164281600-164282000	Enhancers	Right Ventricle	heart
39	chr6:164281600-164282000	Enhancers	GM12878-XiMat	blood
40	chr6:164281600-164282000	Flanking Active TSS	NH-A	brain
41	chr6:164281600-164282200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr6:164281600-164282200	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
43	chr6:164281600-164282400	Enhancers	Adipose Nuclei	Adipose

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