Variant report

Variant	rs7768454
Chromosome Location	chr6:164287315-164287316
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10080282	0.84[EUR][1000 genomes]
rs16895430	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16895435	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16895437	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16895447	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16895449	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56936161	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61392766	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs6455925	0.85[AMR][1000 genomes]
rs6904452	0.81[AMR][1000 genomes]
rs6924091	0.81[AMR][1000 genomes]
rs7752540	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs7767096	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1026707	chr6:164188210-164749206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv538527	chr6:164188210-164749206	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	esv1798922	chr6:164257563-164298780	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:164284200-164288600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr6:164284800-164287400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:164285000-164287400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr6:164285000-164289000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:164285000-164293600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr6:164285400-164287400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr6:164287000-164287800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr6:164287200-164287400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr6:164287200-164287400	Enhancers	Right Ventricle	heart
10	chr6:164287200-164287400	Enhancers	Spleen	Spleen
11	chr6:164287200-164287600	Enhancers	H1 Cell Line	embryonic stem cell
12	chr6:164287200-164287600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr6:164287200-164288600	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr6:164287200-164289000	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr6:164287200-164289000	Enhancers	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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