Variant report

Variant	rs16896976
Chromosome Location	chr4:18400184-18400185
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1506042	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16896977	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16897139	0.83[AMR][1000 genomes]
rs2016935	0.83[AMR][1000 genomes]
rs55956153	0.83[AMR][1000 genomes]
rs57409502	0.83[AMR][1000 genomes]
rs61110390	0.83[AMR][1000 genomes]
rs61529892	0.83[AMR][1000 genomes]
rs6849901	0.83[AMR][1000 genomes]
rs6854857	0.83[AMR][1000 genomes]
rs73800644	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73800647	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73800650	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73800651	0.85[EUR][1000 genomes]
rs73800692	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73801011	0.83[AMR][1000 genomes]
rs73801012	0.83[AMR][1000 genomes]
rs73801013	0.83[AMR][1000 genomes]
rs73804011	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003931	chr4:18241575-18849898	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv533087	chr4:18362040-19176896	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:18391600-18404800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr4:18393400-18403000	Weak transcription	Small Intestine	intestine
3	chr4:18396600-18400600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr4:18396800-18403000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr4:18399000-18401800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr4:18399200-18400400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr4:18399200-18401000	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr4:18399200-18401000	Enhancers	Fetal Intestine Large	intestine
9	chr4:18399200-18401000	Enhancers	Fetal Intestine Small	intestine
10	chr4:18399200-18401200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr4:18399400-18400200	Enhancers	Placenta Amnion	Placenta Amnion
12	chr4:18399400-18400600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr4:18399400-18400800	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr4:18399400-18401800	Enhancers	Brain Germinal Matrix	brain
15	chr4:18399600-18400200	Weak transcription	Fetal Brain Male	brain
16	chr4:18400000-18400800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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