Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs16896976	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs16896977	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs16897139	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16897218	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2016935	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55956153	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs57409502	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61040514	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs61110390	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61529892	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6849901	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6854857	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73800647	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73800650	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73800695	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73801011	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73801012	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73801013	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73801014	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73801036	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73801037	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73801038	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003931	chr4:18241575-18849898	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv533087	chr4:18362040-19176896	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1012283	chr4:18436363-18477654	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:18441600-18443200	Enhancers	Adipose Nuclei	Adipose
2	chr4:18442000-18442800	Active TSS	Pancreatic Islets	Pancreatic Islet
3	chr4:18442200-18442800	Enhancers	Fetal Intestine Large	intestine
4	chr4:18442200-18443000	Enhancers	Fetal Intestine Small	intestine
5	chr4:18442200-18443400	Enhancers	Brain Germinal Matrix	brain
6	chr4:18442400-18443000	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr4:18442400-18443000	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr4:18442400-18443000	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr4:18442400-18443200	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr4:18442600-18443000	Enhancers	iPS-15b Cell Line	embryonic stem cell

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