Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:18401438..18404216-chr4:18406279..18407879,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1506042	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16896976	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16897139	0.83[AMR][1000 genomes]
rs2016935	0.83[AMR][1000 genomes]
rs4698690	0.82[EUR][1000 genomes]
rs55956153	0.83[AMR][1000 genomes]
rs57409502	0.83[AMR][1000 genomes]
rs61110390	0.83[AMR][1000 genomes]
rs61529892	0.83[AMR][1000 genomes]
rs6849901	0.83[AMR][1000 genomes]
rs6854857	0.83[AMR][1000 genomes]
rs73800644	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73800647	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73800650	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73800651	0.87[EUR][1000 genomes]
rs73800692	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73801011	0.83[AMR][1000 genomes]
rs73801012	0.83[AMR][1000 genomes]
rs73801013	0.83[AMR][1000 genomes]
rs73804011	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003931	chr4:18241575-18849898	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv533087	chr4:18362040-19176896	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:18391600-18404800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr4:18393400-18403000	Weak transcription	Small Intestine	intestine
3	chr4:18396800-18403000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr4:18400600-18404400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr4:18401400-18408800	Enhancers	Fetal Intestine Large	intestine
6	chr4:18401400-18409200	Enhancers	Fetal Intestine Small	intestine
7	chr4:18402000-18404000	Enhancers	Rectal Mucosa Donor 31	rectum

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