Variant report

Variant	rs73801037
Chromosome Location	chr4:18578764-18578765
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:18021849..18023611-chr4:18577415..18579435,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000178177	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10002345	1.00[ASN][1000 genomes]
rs10516328	1.00[ASN][1000 genomes]
rs1125247	1.00[ASN][1000 genomes]
rs12509919	1.00[ASN][1000 genomes]
rs16897139	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16897218	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16897428	1.00[ASN][1000 genomes]
rs16897436	1.00[ASN][1000 genomes]
rs16897476	1.00[ASN][1000 genomes]
rs1874288	1.00[ASN][1000 genomes]
rs2016935	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2320980	1.00[ASN][1000 genomes]
rs28393986	1.00[ASN][1000 genomes]
rs2874415	1.00[ASN][1000 genomes]
rs3924699	1.00[ASN][1000 genomes]
rs4256223	1.00[ASN][1000 genomes]
rs4296675	1.00[ASN][1000 genomes]
rs4346646	1.00[ASN][1000 genomes]
rs4698236	1.00[ASN][1000 genomes]
rs4698705	1.00[ASN][1000 genomes]
rs55738315	1.00[ASN][1000 genomes]
rs55956153	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56130703	1.00[ASN][1000 genomes]
rs57409502	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61040514	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61110390	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61486204	1.00[ASN][1000 genomes]
rs61529892	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6449401	1.00[ASN][1000 genomes]
rs6836177	1.00[ASN][1000 genomes]
rs6849901	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6854857	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73104312	1.00[ASN][1000 genomes]
rs73250457	1.00[ASN][1000 genomes]
rs73250463	1.00[ASN][1000 genomes]
rs73250464	1.00[ASN][1000 genomes]
rs73800692	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73800695	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73801011	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73801012	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73801013	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73801014	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73801035	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73801036	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73801038	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73801048	1.00[ASN][1000 genomes]
rs73801050	1.00[ASN][1000 genomes]
rs7671285	1.00[ASN][1000 genomes]
rs7696154	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003931	chr4:18241575-18849898	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv533087	chr4:18362040-19176896	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:18574400-18579800	Weak transcription	HepG2	liver

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