Variant report

Variant	rs12509919
Chromosome Location	chr4:18641262-18641263
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10002345	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10516328	1.00[ASN][1000 genomes]
rs1125247	1.00[ASN][1000 genomes]
rs16897218	1.00[ASN][1000 genomes]
rs16897428	1.00[ASN][1000 genomes]
rs16897436	1.00[ASN][1000 genomes]
rs16897476	1.00[ASN][1000 genomes]
rs1874288	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2320980	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28393986	1.00[ASN][1000 genomes]
rs2874415	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3924699	1.00[ASN][1000 genomes]
rs4256223	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4296675	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4346646	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4698236	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4698705	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55738315	1.00[ASN][1000 genomes]
rs56130703	1.00[ASN][1000 genomes]
rs61040514	1.00[ASN][1000 genomes]
rs61486204	1.00[ASN][1000 genomes]
rs6449401	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6836177	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73104312	1.00[ASN][1000 genomes]
rs73250457	1.00[ASN][1000 genomes]
rs73250463	1.00[ASN][1000 genomes]
rs73250464	1.00[ASN][1000 genomes]
rs73801035	1.00[ASN][1000 genomes]
rs73801036	1.00[ASN][1000 genomes]
rs73801037	1.00[ASN][1000 genomes]
rs73801038	1.00[ASN][1000 genomes]
rs73801048	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73801050	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7671285	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7696154	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003931	chr4:18241575-18849898	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv533087	chr4:18362040-19176896	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv532708	chr4:18596861-19176896	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:18638000-18645400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr4:18639400-18641800	Enhancers	Fetal Lung	lung
3	chr4:18641200-18641400	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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