Variant report

Variant	rs16897428
Chromosome Location	chr4:18700399-18700400
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10002345	1.00[ASN][1000 genomes]
rs10516328	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1125247	1.00[ASN][1000 genomes]
rs12509919	1.00[ASN][1000 genomes]
rs16897218	1.00[ASN][1000 genomes]
rs16897436	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16897476	1.00[ASN][1000 genomes]
rs1874288	1.00[ASN][1000 genomes]
rs2320980	1.00[ASN][1000 genomes]
rs28393986	1.00[ASN][1000 genomes]
rs2874415	1.00[ASN][1000 genomes]
rs3924699	1.00[ASN][1000 genomes]
rs4256223	1.00[ASN][1000 genomes]
rs4296675	1.00[ASN][1000 genomes]
rs4346646	1.00[ASN][1000 genomes]
rs4698236	1.00[ASN][1000 genomes]
rs4698705	1.00[ASN][1000 genomes]
rs55738315	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56130703	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61040514	1.00[ASN][1000 genomes]
rs61486204	1.00[ASN][1000 genomes]
rs6449401	1.00[ASN][1000 genomes]
rs6834186	0.98[EUR][1000 genomes]
rs6836177	1.00[ASN][1000 genomes]
rs73104312	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73250457	1.00[ASN][1000 genomes]
rs73250463	1.00[ASN][1000 genomes]
rs73250464	1.00[ASN][1000 genomes]
rs73800916	0.85[AFR][1000 genomes]
rs73801035	1.00[ASN][1000 genomes]
rs73801036	1.00[ASN][1000 genomes]
rs73801037	1.00[ASN][1000 genomes]
rs73801038	1.00[ASN][1000 genomes]
rs73801048	1.00[ASN][1000 genomes]
rs73801050	1.00[ASN][1000 genomes]
rs7655274	0.95[EUR][1000 genomes]
rs7656712	0.95[EUR][1000 genomes]
rs7671285	1.00[ASN][1000 genomes]
rs7696154	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003931	chr4:18241575-18849898	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv533087	chr4:18362040-19176896	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv532708	chr4:18596861-19176896	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv878722	chr4:18668957-18741988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv878723	chr4:18668957-19005988	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:18694000-18700400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr4:18699200-18700800	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr4:18699400-18700400	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr4:18699600-18700600	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr4:18699800-18700400	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr4:18699800-18700400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr4:18699800-18700400	Enhancers	Pancreas	Pancrea
8	chr4:18699800-18700600	Enhancers	H1 Cell Line	embryonic stem cell
9	chr4:18700000-18700400	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr4:18700000-18700400	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr4:18700200-18700400	Enhancers	GM12878-XiMat	blood
12	chr4:18700200-18700600	Enhancers	H9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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