Variant report
| Variant | rs56130703 |
|---|---|
| Chromosome Location | chr4:18706402-18706403 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:35)
| rs_ID | r2[population] |
|---|---|
| rs10002345 | 1.00[ASN][1000 genomes] |
| rs10516328 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1125247 | 1.00[ASN][1000 genomes] |
| rs12509919 | 1.00[ASN][1000 genomes] |
| rs16897218 | 1.00[ASN][1000 genomes] |
| rs16897428 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16897436 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16897476 | 0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1874288 | 1.00[ASN][1000 genomes] |
| rs2320980 | 1.00[ASN][1000 genomes] |
| rs28393986 | 1.00[ASN][1000 genomes] |
| rs2874415 | 1.00[ASN][1000 genomes] |
| rs3924699 | 1.00[ASN][1000 genomes] |
| rs4256223 | 1.00[ASN][1000 genomes] |
| rs4296675 | 1.00[ASN][1000 genomes] |
| rs4346646 | 1.00[ASN][1000 genomes] |
| rs4698236 | 1.00[ASN][1000 genomes] |
| rs4698705 | 1.00[ASN][1000 genomes] |
| rs55738315 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61040514 | 1.00[ASN][1000 genomes] |
| rs61486204 | 1.00[ASN][1000 genomes] |
| rs6449401 | 1.00[ASN][1000 genomes] |
| rs6836177 | 1.00[ASN][1000 genomes] |
| rs73104312 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73250457 | 1.00[ASN][1000 genomes] |
| rs73250463 | 1.00[ASN][1000 genomes] |
| rs73250464 | 1.00[ASN][1000 genomes] |
| rs73801035 | 1.00[ASN][1000 genomes] |
| rs73801036 | 1.00[ASN][1000 genomes] |
| rs73801037 | 1.00[ASN][1000 genomes] |
| rs73801038 | 1.00[ASN][1000 genomes] |
| rs73801048 | 1.00[ASN][1000 genomes] |
| rs73801050 | 1.00[ASN][1000 genomes] |
| rs7671285 | 1.00[ASN][1000 genomes] |
| rs7696154 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1003931 | chr4:18241575-18849898 | Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 2 | nsv533087 | chr4:18362040-19176896 | Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 3 | nsv532708 | chr4:18596861-19176896 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | Chromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 4 | nsv878722 | chr4:18668957-18741988 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer | Chromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| 5 | nsv878723 | chr4:18668957-19005988 | Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS | Chromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:18700600-18712400 | Weak transcription | H9 Cell Line | embryonic stem cell |
