Variant report
| Variant | rs16899668 |
|---|---|
| Chromosome Location | chr5:29882842-29882843 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-DROSHA-10 | chr5:29881816-29883052 | NONHSAT100866 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:14)
| rs_ID | r2[population] |
|---|---|
| rs10520953 | 0.82[CHB][hapmap];0.90[JPT][hapmap] |
| rs12697227 | 0.82[CHB][hapmap] |
| rs1428318 | 0.98[EUR][1000 genomes] |
| rs1428321 | 0.83[CHB][hapmap];0.91[JPT][hapmap];0.98[EUR][1000 genomes] |
| rs16899550 | 0.88[CHB][hapmap];0.90[JPT][hapmap];0.98[EUR][1000 genomes] |
| rs16899578 | 0.81[CHB][hapmap];0.91[JPT][hapmap] |
| rs16899679 | 0.89[CHB][hapmap];1.00[YRI][hapmap] |
| rs72745276 | 0.98[EUR][1000 genomes] |
| rs72745277 | 0.98[EUR][1000 genomes] |
| rs72745278 | 0.97[EUR][1000 genomes] |
| rs72745295 | 0.98[EUR][1000 genomes] |
| rs9292344 | 0.98[EUR][1000 genomes] |
| rs9790891 | 0.98[EUR][1000 genomes] |
| rs9791032 | 0.98[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3385368 | chr5:29548608-29910057 | Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 2 | nsv1018779 | chr5:29861138-29937229 | Enhancers Weak transcription ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv1029641 | chr5:29861138-29940871 | Enhancers Weak transcription ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | esv2763448 | chr5:29875965-29887070 | Inactive region | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
