Variant report

Variant	rs16899679
Chromosome Location	chr5:29887070-29887071
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10520953	0.91[CEU][hapmap];0.83[CHB][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap]
rs12697227	0.83[CHB][hapmap];0.86[MEX][hapmap]
rs1428318	0.97[EUR][1000 genomes]
rs1428321	0.91[CEU][hapmap];0.83[CHB][hapmap];0.97[EUR][1000 genomes]
rs16899550	0.82[CHB][hapmap];0.97[EUR][1000 genomes]
rs16899578	0.82[CHB][hapmap]
rs16899668	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72745276	0.97[EUR][1000 genomes]
rs72745277	0.97[EUR][1000 genomes]
rs72745278	0.95[EUR][1000 genomes]
rs72745295	0.97[EUR][1000 genomes]
rs9292344	0.97[EUR][1000 genomes]
rs9790891	0.97[EUR][1000 genomes]
rs9791032	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3385368	chr5:29548608-29910057	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1018779	chr5:29861138-29937229	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1029641	chr5:29861138-29940871	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2763448	chr5:29875965-29887070	Inactive region	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links