Variant report

Variant	rs16901780
Chromosome Location	chr8:127860003-127860004
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs16901775	0.83[YRI][hapmap];0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs16901799	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs16901802	0.83[AFR][1000 genomes]
rs16901805	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs2008991	0.81[YRI][hapmap];0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs3999836	0.81[YRI][hapmap];0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs5894841	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs73330313	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1819408	chr8:127835876-127898165	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv6382	chr8:127845446-127890549	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:127857400-127862000	Weak transcription	Fetal Kidney	kidney
2	chr8:127857600-127861400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr8:127857800-127860200	Enhancers	Fetal Muscle Leg	muscle
4	chr8:127858000-127860200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr8:127858000-127860200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr8:127858000-127866400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr8:127858400-127861000	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr8:127858600-127861000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr8:127858600-127869400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr8:127859000-127860200	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr8:127859400-127861200	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr8:127859800-127861400	Weak transcription	HSMMtube	muscle
13	chr8:127860000-127860200	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr8:127860000-127860200	ZNF genes & repeats	Pancreas	Pancrea
15	chr8:127860000-127860200	Enhancers	Psoas Muscle	Psoas
16	chr8:127860000-127860200	Enhancers	HMEC	breast
17	chr8:127860000-127860400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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