Variant report

Variant	rs16901805
Chromosome Location	chr8:127870717-127870718
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs16901775	0.91[ASW][hapmap];1.00[MEX][hapmap]
rs16901780	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs16901799	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16901802	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs5894841	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59597520	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs61419982	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs61682348	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7017492	1.00[MEX][hapmap]
rs73330322	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1819408	chr8:127835876-127898165	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv6382	chr8:127845446-127890549	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv831456	chr8:127861583-128025508	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:127870600-127876000	Weak transcription	NHEK	skin
2	chr8:127870600-127877400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr8:127870600-127880400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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