Variant report

Variant	rs16901802
Chromosome Location	chr8:127869423-127869424
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs16901775	0.91[ASW][hapmap]
rs16901780	0.83[AFR][1000 genomes]
rs16901799	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs16901805	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs5894841	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs59597520	0.80[AFR][1000 genomes]
rs61419982	0.81[AFR][1000 genomes]
rs61682348	0.81[AFR][1000 genomes]
rs73330322	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1819408	chr8:127835876-127898165	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv6382	chr8:127845446-127890549	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv831456	chr8:127861583-128025508	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:127868800-127870600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr8:127868800-127870600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr8:127869000-127870200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr8:127869400-127870000	Enhancers	HSMM	muscle
5	chr8:127869400-127870200	Enhancers	Muscle Satellite Cultured Cells	--
6	chr8:127869400-127870400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr8:127869400-127870600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr8:127869400-127870600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr8:127869400-127870600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr8:127869400-127870600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr8:127869400-127870600	Enhancers	GM12878-XiMat	blood
12	chr8:127869400-127870600	Enhancers	HMEC	breast
13	chr8:127869400-127870600	Enhancers	NHEK	skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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