Variant report

Variant	rs16901879
Chromosome Location	chr5:44497307-44497308
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs1004720	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10512853	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10512855	1.00[CEU][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13158765	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13160481	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13160899	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13166702	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13169538	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13171351	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13176611	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13176804	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13182739	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13184756	1.00[CEU][hapmap];0.85[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13188583	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13189872	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1482676	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16901855	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16901889	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16901892	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2062140	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2128437	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34031522	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34057718	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34110145	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34180349	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34277429	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34414216	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34439572	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34462071	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34512854	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34611602	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34617631	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34640244	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34810292	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35074718	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35108601	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35262233	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35321661	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35391530	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35483918	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35517954	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35530450	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35544349	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35805621	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35947880	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55880927	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66479031	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs66570818	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs66704172	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66815332	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs67771916	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72748094	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830277	chr5:44383402-44566881	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1024923	chr5:44439853-44528314	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:44496000-44499800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr5:44496800-44509000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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